References

This page lists RSE-related publications curated by the HiRSE community. It covers research software engineering best practices, FAIR software principles, sustainable software development, and related topics.

You can download the full bibliography as a BibTeX file: Download .bib file

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Publications by Year

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2025

• Good practice versus reality: A landscape analysis of Research Software metadata adoption in European Open Science Clusters
  Anas El Hounsri, Daniel Garijo
  2025 IEEE/ACM 22nd International Conference on Mining Software Repositories (MSR), pp. 116--128, 2025
  DOI: 10.1109/MSR66628.2025.00028
• GI- und DE-RSE Muster-Leitlinie zur effizienten Entwicklung von Forschungssoftware
  Andreas Czerniak, Adrian Ehrenhofer, Bernadette Fritzsch, Maximilian Funk, Florian Goth, Reiner Hähnle, Carina Haupt, Marco Konersmann, Jan Linxweiler, Frank Löffler, Alexander Lüpges, Bernhard Rumpe, Ina Schieferdecker, Tobias Schlauch, Robert Speck, Alexander Struck, Jan Philipp Thiele, Matthias Tichy, Inga Ulusoy
  2025
  DOI: 10.18420/2025-GI_DE-RSE
• Reviewing reproducibility in software engineering research
  André F. R. Cordeiro, Jr., Edson Oliveira
  Proceedings of the 27^th International Conference on Enterprise Information Systems – Volume 2: ICEIS, pp. 364--371, 2025
  DOI: 10.5220/0013456000003929
• Ironies of generative AI: understanding and mitigating productivity loss in human-AI interaction
  Auste Simkute, Lev Tankelevitch, Viktor Kewenig, Ava Elizabeth Scott, Abigail Sellen, Sean Rintel
  International Journal of Human–Computer Interaction, 41(5), pp. 2898--2919, 2025
  DOI: 10.1080/10447318.2024.2405782
• Decoding research software impact
  Deekshitha, Rena Bakhshi, Rob van Nieuwpoort, Slinger Jansen
  CEUR Workshop Proceedings, 3921, 2025
  https://ceur-ws.org/Vol-3921/
• Digitale Forschungspraxis und kooperative Informationsinfrastrukturen. Ein Diskussionspapier der Deutschen Forschungsgemeinschaft zu Förderung und Finanzierung wissenschaftlicher Informationsinfrastrukturen
  Deutsche Forschungsgemeinschaft. Ausschuss für Wissenschaftliche Bibliotheken und Informationssysteme
  2025
  DOI: 10.5281/ZENODO.14621979
• Strategic priorities and challenges in research software funding: Results from an international survey [version 2; peer review: 2 approved, 2 approved with reservations, 1 not approved]
  Eric A. Jensen, Daniel S. Katz
  F1000Research, 13(1447), 2025
  DOI: 10.12688/f1000research.155879.2
• Teaching research software engineering skills for developing simulation software
  Gerasimos Chourdakis, Hasan Ashraf, Santiago Narvaez Rivas, Tobias Neckel, Hans-Joachim Bungartz
  Electronic Communications of the EASST, 83, 2025
  DOI: 10.14279/eceasst.v83.2615
• Open Research Tools: Stand und Herausforderungen im Spannungsfeld von Forschungssoftware, Offenheit und digitaler Infrastruktur
  Jürgen Streicher, Marlies Schütz, Clemens Blümel, Alexander Schniedermann
  2025
  DOI: 10.5281/ZENODO.15771943
• Sharing is caring: the effect of knowledge exchange workshops on community commitment among research software engineers
  Katharina Dworatzyk, Tobias Schlauch
  Human-Computer Interaction, pp. 157--174, 2025
  DOI: 10.1007/978-3-031-93835-1_10
• FACILE-RS: archiving and long-term preservation of research software repositories made easy
  Marie Houillon, Jochen Klar, Ziad Boutanios, Tomas Stary, Terry Cojean, Hartwig Anzt, Axel Loewe
  Journal of Open Source Software, 10(114), pp. 7330, 2025
  DOI: 10.21105/joss.07330
• A 2030 roadmap for software engineering
  Mauro Pezzè, Silvia Abrahão, Birgit Penzenstadler, Denys Poshyvanyk, Abhik Roychoudhury, Tao Yue
  ACM Transactions on Software Engineering and Methodology, 34(5), 2025
  DOI: 10.1145/3731559
• Investigating Research Software Engineering: Toward RSE Research
  Michael Felderer, Michael Goedicke, Lars Grunske, Wilhelm Hasselbring, Anna-Lena Lamprecht, Bernhard Rumpe
  Communications of the ACM, 68(2), pp. 20--23, 2025
  DOI: 10.1145/3685265
• Ten Simple Rules for Catalyzing Collaborations and Building Bridges between Research Software Engineers and Software Engineering Researchers
  Nasir U. Eisty, Jeffrey C. Carver, Johanna Cohoon, Ian A. Cosden, Carole Goble, Samuel Grayson
  Computing in Science & Engineering, pp. 1--7, 2025
  DOI: 10.1109/MCSE.2025.3569786
• The future of research software is the future of research
  Neil P. Chue Hong, Selina Aragon, Simon Hettrick, Caroline Jay
  Patterns, 6(7), pp. 101322, 2025
  DOI: 10.1016/j.patter.2025.101322
• Stop treating code like an afterthought: record, share and value it
  Roberto Di Cosmo, Sabrina Granger, Konrad Hinsen, Nicolas Jullien, Daniel Le Berre, Violaine Louvet, Camille Maumet, Clémentine Maurice, Raphaël Monat, Nicolas P. Rougier
  Nature, 646(8084), pp. 284--286, 2025
  DOI: 10.1038/d41586-025-03196-0
• Seek and You Shall Find - Or Not! Why Can't We Find the Research Software We Really Need?
  Ronny Gey, Tim Wittenborg, Daniel Mietchen, Alexander Struck, Oliver Karras
  2025
  DOI: 10.5281/ZENODO.14878607
• find.software: Foundations for Interdisciplinary Discovery of (Research) Software
  Ronny Gey, Daniel Mietchen, Oliver Karras, Tim Wittenborg, Moritz Schubotz, Jan Bumberger
  Research Ideas and Outcomes, 11, pp. e179253, 2025
  DOI: 10.3897/rio.11.e179253
• Code for Science: Bessere Forschung durch bessere Forschungssoftwarekompetenzen
  Simon Christ, Bernadette Fritzsch, Yves Vincent Grossmann, Dominic Kempf, Jan Linxweiler, Frank Löffler, Lydia Riedl, Jan Philipp Thiele, Adina S. Wagner, Lorenzo Zanon, Cora Assmann, Dirk Brömmel, René Caspart, Mustafa Dogan, Sven Fillinger, Jasmin Frangenberg, Michael Franke, Annalena Frey, Jonas Hagenberg, Carina Haupt, Volodymyr Kushnarenko, Sarah Neuwirth, Tobias Ribizel, Jens Saak, Andreas Schieberle, Kristine Schima-Voigt, Peter Schmidt, Heidi Seibold, Robert Speck, Mathijs Vleugel, Alexander Wellmann, Philipp Wieder, Samantha Wittke
  2025
  DOI: 10.5281/ZENODO.14273366
• Better architecture, better software, better research
  Stephan Druskat, Nasir U. Eisty, Robert Chisholm, Neil P. Chue Hong, Ryan C. Cocking, Myra B. Cohen, Michael Felderer, Lars Grunske, Sarah A. Harris, Wilhelm Hasselbring, Thomas Krause, Jan Linxweiler, Colin C. Venters
  Computing in Science & Engineering, 27(2), pp. 45--57, 2025
  DOI: 10.1109/MCSE.2025.3573887
• Challenges in Designing Research Infrastructure Software in Multi-Stakeholder Contexts
  Stephan Druskat, Sabine Theis
  Human-Computer Interaction, 15767, pp. 321--343, 2025
  DOI: 10.1007/978-3-031-93838-2_21
• What can computer science educators learn from the failures of top-down pedagogy?
  Sverrir Thorgeirsson, Tracy Ewen, Zhendong Su
  Proceedings of the 56^th ACM technical symposium on computer science education (SIGCSETS 2025), volume 1, pp. 1127--1133, 2025
  DOI: 10.1145/3641554.3701873
• Enabling new pathways for Research Software Engineers: three years of the UNIVERSE-HPC project
  Weronika Filinger, Neil Chue Hong, Stephen Crouch, Martin Robinson, Jeremy Cohen, David Henty
  Practice and Experience in Advanced Research Computing 2025 (PEARC '25), 2025
  DOI: 10.1145/3708035.3736008
• Multidimensional Research Software Categorization
  Wilhelm Hasselbring, Stephan Druskat, Jan Bernoth, Philine Betker, Michael Felderer, Stephan Ferenz, Ben Hermann, Anna-Lena Lamprecht, Jan Linxweiler, Arnau Prat, Bernhard Rumpe, Katrin Schöning-Stierand, Shinhyung Yang
  Computing in Science & Engineering, 27(2), pp. 59--68, 2025
  DOI: 10.1109/MCSE.2025.3555023

2024

• Requirements Engineering for Research Software: A Vision
  Adrian Bajraktari, Michelle Binder, Andreas Vogelsang
  2024
  DOI: 10.48550/ARXIV.2405.07781
• Reproducible Workflows and Compute Environments for Reusable Datasets, Simulations and Research Software
  Alan Correa, Anil Yildiz, Julia Kowalski
  2024
  DOI: 10.5194/egusphere-egu24-18724
• RepoFromPaper: An Approach to Extract Software Code Implementations from Scientific Publications
  Aleksandar Stankovski, Daniel Garijo
  2024
• Software in science is ubiquitous yet overlooked
  Alexandre Hocquet, Frédéric Wieber, Gabriele Gramelsberger, Konrad Hinsen, Markus Diesmann, Fernando Pasquini Santos, Catharina Landström, Benjamin Peters, Dawid Kasprowicz, Arianna Borrelli, Phillip Roth, Clarissa Ai Ling Lee, Alin Olteanu, Stefan Böschen
  Nature Computational Science, 2024
  DOI: https://doi.org/10.1038/s43588-024-00651-2
• Automated Extraction of Research Software Installation Instructions from README files: An Initial Analysis
  Carlos Utrilla Guerrero, Oscar Corcho, Daniel Garijo
  2024
• Clarifying Dual Use Research of Concern
  Christopher Bobier, Daniel J. Hurst
  Philosophy & Technology, 37(4), pp. 139, 2024
  DOI: 10.1007/s13347-024-00827-8
• Building RSE Communities
  Claire Wyatt
  2024
  https://juser.fz-juelich.de/record/1034677
• Navigating the complexity of generative AI adoption in software engineering
  Daniel Russo
  ACM Transactions on Software Engineering and Methodology, 33(5), 2024
  DOI: 10.1145/3652154
• Special issue on software citation, indexing, and discoverability
  Daniel S. Katz, Neil P. Chue Hong
  PeerJ Computer Science, 10, pp. e1951, 2024
  DOI: 10.7717/peerj-cs.1951
• RSMM: A Framework to Assess Maturity of Research Software Project
  Deekshitha, Rena Bakhshi, Jason Maassen, Carlos Martinez Ortiz, Rob van Nieuwpoort, Slinger Jansen
  2024
• A Vision on Open Science for the Evolution of Software Engineering Research and Practice
  Edson OliveiraJr, Fernanda Madeiral, Alcemir Rodrigues Santos, Christina von Flach, Sergio Soares
  Companion proceedings of the 32^nd ACM international conference on the Foundations of Software Engineering (FSE 2024), pp. 512--516, 2024
  DOI: 10.1145/3663529.3663788
• Foundational Competencies and Responsibilities of a Research Software Engineer [version 1; peer review: 2 approved]
  Florian Goth, Renato Alves, Matthias Braun, Leyla Jael Castro, Gerasimos Chourdakis, Simon Christ, Jeremy Cohen, Stephan Druskat, Fredo Erxleben, Jean-Noël Grad, Magnus Hagdorn, Toby Hodges, Guido Juckeland, Dominic Kempf, Anna-Lena Lamprecht, Jan Linxweiler, Frank Löffler, Michele Martone, Moritz Schwarzmeier, Heidi Seibold, Jan Philipp Thiele, Harald von Waldow, Samantha Wittke
  F1000Research, 13(1429), 2024
  DOI: 10.12688/f1000research.157778.1
• A coherent curriculum track of RSE skills for simulation software
  Gerasimos Chourdakis
  deRSE24, 2024
  https://events.hifis.net/event/994/contributions/7961/
• A choice, not an obligation: Releasing scientific software as open source should be the responsibility of the authors
  I Kappas, VJ Promponas, CA Ouzounis
  EMBO Reports, 25(2), pp. 464--466, 2024
  DOI: 10.1038/s44319-023-00039-9
• A large-scale survey on the usability of AI programming assistants: Successes and challenges
  Jenny T. Liang, Chenyang Yang, Brad A. Myers
  Proceedings of the IEEE/ACM 46^th International Conference on Software Engineering, pp. 1--13, 2024
  DOI: 10.1145/3597503.3608128
• Sustaining Scientific Open-Source Software Ecosystems: Challenges, Practices, and Opportunities
  Jiayi Sun
  Proceedings of the 2024 IEEE/ACM 46^th International Conference on Software Engineering: Companion Proceedings, 2024
  DOI: 10.1145/3639478.3639805
• How to Sustain a Scientific Open-Source Software Ecosystem: Learning from the Astropy Project
  Jiayi Sun, Aarya Patil, Youhai Li, Jin L. C. Guo, Shurui Zhou
  2024
  DOI: 10.48550/ARXIV.2402.15081
• Six tips for going public with your lab's software
  Julian Nowogrodzki
  Nature, 634(8034), pp. 742--743, 2024
  DOI: 10.1038/d41586-024-03344-y
• Ten simple rules for teaching sustainable software engineering
  Kit Gallagher, Richard Creswell, Ben Lambert, Martin Robinson, Chon Lok Lei, Gary R. Mirams, David J. Gavaghan
  2024
  DOI: 10.48550/ARXIV.2402.04722
• Research Software Engineering-Forschungssoftware effizient erstellen und dauerhaft erhalten
  Lars Grunske, Anna-Lena Lamprecht, Wilhelm Hasselbring, Bernhard Rumpe
  Forschung & Lehre, 24(3), pp. 186--188, 2024
• Open Software Catalogue – Supporting the Management of Research Software
  Marcin Wolski, Jan Todek, Maciej Łabędzki, Bartosz Walter
  Good Practices and New Perspectives in Information Systems and Technologies, pp. 165--171, 2024
  DOI: 10.1007/978-3-031-60227-6_14
• nfdi.software - Initialisation Phase
  Martin Hammitzsch, Beate Hetenyi, Björn Grüning, Aleksander Marcic, Matthias Löbe, Layla-Jael Castro, Felix Engel, Konrad Höfner, Michael Zacharias, Oliver Werth, Vasiliy Seibert, Andreas Rausch
  2024
  DOI: 10.5281/ZENODO.14507302
• Research Software Engineering: A Guide to the Open Source Ecosystem
  Matthias Bannert
  2024
  DOI: 10.1201/9781003286899
• No Free Lunch: Research Software Testing in Teaching
  Michael Dorner, Andreas Bauer, Florian Angermeir
  2024
  DOI: 10.48550/ARXIV.2405.11965
• Non-expert programmers in the generative AI future
  Molly Q Feldman, Carolyn Jane Anderson
  Proceedings of the 3^rd Annual Meeting of the Symposium on Human-Computer Interaction for Work (CHIWORK '24), pp. 1--19, 2024
  DOI: 10.1145/3663384.3663393
• Teaching ethics in computing: A systematic literature review of ACM computer science education publications
  Noelle Brown, Benjamin Xie, Ella Sarder, Casey Fiesler, Eliane S. Wiese
  ACM Transactions on Computing Education, 24(1), 2024
  DOI: 10.1145/3634685
• DataDesc: A framework for creating and sharing technical metadata for research software interfaces
  Patrick Kuckertz, Jan Göpfert, Oliver Karras, David Neuroth, Julian Schönau, Rodrigo Pueblas, Stephan Ferenz, Felix Engel, Noah Pflugradt, Jann M. Weinand, Astrid Nieße, Sören Auer, Detlef Stolten
  Patterns, pp. 101064, 2024
  DOI: 10.1016/j.patter.2024.101064
• Open geospatial research software in 2024: Assessing service quality with technology readiness levels
  Peter Löwe
  2024
  DOI: 10.5194/egusphere-egu24-6254
• FAIR-USE4OS: Guidelines for creating impactful open-source software
  Raphael Sonabend, Hugo Gruson, Leo Wolansky, Agnes Kiragga, Daniel S. Katz
  PLOS Computational Biology, 20(5), pp. e1012045, 2024
  DOI: 10.1371/journal.pcbi.1012045
• FAIR-USE4OS: Guidelines for Creating Impactful Open-Source Software
  Raphael Sonabend, Hugo Gruson, Leo Wolansky, Agnes Kiragga, Daniel S. Katz
  2024
  DOI: 10.48550/ARXIV.2402.02824
• FAIR Workflows and Methods for Scaling
  Sean R. Wilkinson
  2024
  DOI: 10.5194/egusphere-egu24-19486
• State of the practice for lattice Boltzmann method software
  Spencer Smith, Peter Michalski, Jacques Carette, Zahra Keshavarz-Motamed
  Archives of Computational Methods in Engineering, 31(1), pp. 313--350, 2024
  DOI: 10.1007/s11831-023-09981-2
• Software engineering, research software and requirements engineering
  Stephan Druskat, Michael Felderer, Carina Haupt
  Softwaretechnik-Trends, 44(1), 2024
  https://dl.gi.de/items/1b96d440-bd4d-48c4-8eb6-1b368206addd
• Research Software Requirements Engineering?
  Stephan Druskat
  2024
  DOI: 10.5281/ZENODO.10696026
• Software engineering, research software and requirements engineering
  Stephan Druskat, Michael Felderer, Carina Haupt
  Softwaretechnik-Trends Band 44, Heft 1, 2024
• Byte-sized RSE: Season 2, Session 5 - Citation File Format (CFF) / cffinit
  Stephan Druskat, Abel Soares Siqueira, Reggie Cushing, Olga Lyashevska, Martinez Carlos
  2024
  DOI: 10.5281/ZENODO.10838021
• Don't mention it: An approach to assess challenges to using software mentions for citation and discoverability research
  Stephan Druskat, Neil P. Chue Hong, Sammie Buzzard, Olexandr Konovalov, Patrick Kornek
  2024
  DOI: 10.48550/ARXIV.2402.14602
• Differenzierbare Forschungssoftware
  Uwe Naumann
  Softwaretechnik-Trends Band 44, Heft 1, 2024
• Betty's (Re) Search Engine: A client-based search engine for research software stored in repositories.
  Vasiliy Seibert, Andreas Rausch, Stefan Wittek
  ing. grid, 1(2), 2024
• Software engineering education must adapt and evolve for an LLM environment
  Vassilka D. Kirova, Cyril S. Ku, Joseph R. Laracy, Thomas J. Marlowe
  Proceedings of the 55^th ACM technical symposium on computer science education (SIGCSE 2024), volume 1, pp. 666--672, 2024
  DOI: 10.1145/3626252.3630927
• Toward Research Software Categories
  Wilhelm Hasselbring, Stephan Druskat, Jan Bernoth, Philine Betker, Michael Felderer, Stephan Ferenz, Anna-Lena Lamprecht, Jan Linxweiler, Bernhard Rumpe
  2024
  DOI: 10.48550/ARXIV.2404.14364
• Towards a Quality Indicator for Research Data publications and Research Software publications – A vision from the Helmholtz Association
  Wolfgang zu Castell, Doris Dransch, Guido Juckeland, Marcel Meistring, Bernadette Fritzsch, Ronny Gey, Britta Höpfner, Martin Köhler, Christian Meeßen, Hela Mehrtens, Felix Mühlbauer, Sirko Schindler, Thomas Schnicke, Roland Bertelmann
  2024
  DOI: 10.48550/ARXIV.2401.08804
• Software Management Plans – Current Concepts, Tools, and Application
  Yves Vincent Grossmann, Giacomo Lanza, Katarzyna Biernacka, Tim Hasler, Kerstin Helbig
  Data Science Journal, 23, pp. 43, 2024
  DOI: 10.5334/dsj-2024-043

2023

• Hiring, Managing, and Retaining Data Scientists and Research Software Engineers in Academia: A Career Guidebook from ADSA and US-RSE
  
  2023
  DOI: 10.5281/zenodo.8264152
• Towards Assessing FAIR Research Software Best Practices in an Organization Using RDF-star.
  Ana Iglesias-Molina, Daniel Garijo
  SEMANTiCS (Posters & Demos), 2023
• The digital competence of academics in higher education: is the glass half empty or half full?
  Andreia Inamorato dos Santos, Ernesto Chinkes, Marco A. G. Carvalho, Claudia M. V. Solórzano, Lilian S. Marroni
  International Journal of Educational Technology in Higher Education, 20(1), 2023
  DOI: 10.1186/s41239-022-00376-0
• Neue Fachgruppe „Research Software Engineering`` gegründet
  Anna-Lena Lamprecht, Wilhelm Hasselbring, Jan Philipp Dietrich, Bernadette Fritzsch, Michael Goedicke, Lars Grunske, Carina Haupt, Stephan Janosch, Frank Löffler, Bernhard Rumpe, Robert Speck
  Softwaretechnik-Trends, 43(3), 2023
  https://dl.gi.de/items/e91d1e43-6168-4686-a81d-b29f27090752
• ENCORE. A practical implementation to improve reproducibility and transparency of computational research.
  Antoine van Kampen, Utkarsh Mahamune, Aldo Jongejan, Barbera van Schaik, Daria Balashova, Danial Lashgari, Mia Pras-Raves, Eric Wever, Rodrigo Garcia Valiente, Adrie Dane, others
  2023
• Research software engineering and the importance of scientific models
  Benoit Combemale, Jeff Gray, Bernhard Rumpe
  Software and Systems Modeling, 22(4), pp. 1081--1083, 2023
  DOI: 10.1007/s10270-023-01119-z
• Research Software - from ugly ducklings to beautiful swans
  Bernadette Fritzsch
  2023
  DOI: 10.5281/ZENODO.8341375
• Ten simple rules for working with other people's code
  Charlie Pilgrim, Paul Kent, Kasra Hosseini, Ed Chalstrey
  PLOS Computational Biology, 19(4), pp. e1011031, 2023
  DOI: 10.1371/journal.pcbi.1011031
• From Research to Regulated Software
  Christoph Kämpf, Alexander Scholz, Markus Kreuz, Kristin Reiche
  2023
  DOI: 10.5281/ZENODO.7751723
• Sustainable software engineering: Reflections on advances in research and practice
  Colin C. Venters, Rafael Capilla, Elisa Yumi Nakagawa, Stefanie Betz, Birgit Penzenstadler, Tom Crick, Ian Brooks
  Information and Software Technology, 164, pp. 107316, 2023
  DOI: 10.1016/j.infsof.2023.107316
• Better incentives are needed to reward academic software development
  Cory Merow, Brad Boyle, Brian J. Enquist, Xiao Feng, Jamie M. Kass, Brian S. Maitner, Brian McGill, Hannah Owens, Daniel S. Park, Andrea Paz, Gonzalo E. Pinilla-Buitrago, Mark C. Urban, Sara Varela, Adam M. Wilson
  Nature Ecology & Evolution, 2023
  DOI: 10.1038/s41559-023-02008-w
• Advancing Software Citation Implementation (Software Citation Workshop 2022)
  Daina Bouquin, Ana Trisovic, Oliver Bertuch, Elena Colón-Marrero
  2023
  DOI: 10.48550/ARXIV.2302.07500
• The Changing Role of RSEs over the Lifetime of Parsl
  Daniel S. Katz, Ben Clifford, Yadu Babuji, Kevin Hunter Kesling, Anna Woodard, Kyle Chard
  2023
  DOI: 10.48550/ARXIV.2307.11060
• Research Software Engineering in 2030
  Daniel S. Katz, Simon Hettrick
  2023 IEEE 19^th International Conference on e-Science (e-Science), 2023
  DOI: 10.1109/e-science58273.2023.10254813
• Understanding practices and challenges of developing sustainable research software: a pilot interview.
  Daniela Feitosa, Christina von Flach, Joenio Costa
  WORKSHOP DE PRÁTICAS DE CIÊNCIA ABERTA PARA ENGENHARIA DE SOFTWARE (OPENSCIENSE), 2023
• Research software engineering accelerates the translation of biomedical research for health
  David Horsfall, Jonah Cool, Simon Hettrick, Angela Oliveira Pisco, Neil Chue Hong, Muzlifah Haniffa
  Nature Medicine, 29(6), pp. 1313--1316, 2023
  DOI: 10.1038/s41591-023-02353-0
• Containers for computational reproducibility
  David Moreau, Kristina Wiebels, Carl Boettiger
  Nature Reviews Methods Primers, 3(1), 2023
  DOI: 10.1038/s43586-023-00236-9
• A multi-level analysis of data quality for formal software citation
  David Schindler, Tazin Hossain, Sascha Spors, Frank Krüger
  2023
  DOI: 10.48550/ARXIV.2306.17535
• Computational Reproducibility in Computational Social Science
  David Schoch, Chung-hong Chan, Claudia Wagner, Arnim Bleier
  2023
  DOI: 10.48550/ARXIV.2307.01918
• Ten simple rules for providing bioinformatics support within a hospital
  Davide Chicco, Giuseppe Jurman
  BioData Mining, 16(1), 2023
  DOI: 10.1186/s13040-023-00326-0
• FAIRSECO: An Extensible Framework for Impact Measurement of Research Software
  Deekshitha, Siamak Farshidi, Jason Maassen, Rena Bakhshi, Rob Van Nieuwpoort, Slinger Jansen
  2023 IEEE 19^th International Conference on e-Science (e-Science), 2023
  DOI: 10.1109/e-science58273.2023.10254664
• Sicherstellung der Reproduzierbarkeit von Forschungsergebnissen durch Bewahrung des Zugriffs auf Forschungssoftware
  Dirk von Suchdoletz, Peter Brettschneider, Alexandra Axtmann, Maximilian Heber, Lars Oberländer, Jan Leendertse, Irene Schumm, Olaf Brandt, Karsten Schmidt, Livia Gertis, Michael Selzer, Robert Ulrich, Dorothea Iglezakis, Valerie Boda
  2023
  DOI: 10.17192/BFDM.2023.5.8555
• Where is all the research software? An analysis of software in UK academic repositories
  Domhnall Carlin, Austen Rainer, David Wilson
  PeerJ Computer Science, 9, pp. e1546, 2023
  DOI: 10.7717/peerj-cs.1546
• SoftWhere? Searching for research software in the UK
  Domhnall Carlin
  2023
  https://se4science.org/workshops/se4rse23/index.htm
• Continuously Accelerating Research
  Earl Barr, Jonathan Bell, Michael Hilton, Sergey Mechtaev, Christopher Timperley
  2023
• Management of mathematical research software and data
  Emil Løvbak, Mustafa Dikmen, Naeem Muhammad, Giovanni Samaey
  proceedings 2023, 2023
  DOI: 10.21428/1192f2f8.e175b077
• Cited But Not Archived: Analyzing the Status of Code References in Scholarly Articles
  Emily Escamilla, Martin Klein, Talya Cooper, Vicky Rampin, Michele C. Weigle, Michael L. Nelson
  Lecture Notes in Computer Science, pp. 194--207, 2023
  DOI: 10.1007/978-981-99-8088-8_17
• From Code to Tenure: Valuing Research Software in Academia
  Eric A. Jensen, Daniel S. Katz
  Commonplace, 2023
• Investigating Developers' Perception on Success Factors for Research Software Development
  Erica Mourão, Daniela Trevisan, José Viterbo, Carlos Eduardo Pantoja
  New Sustainable Horizons in Artificial Intelligence and Digital Solutions, pp. 14--26, 2023
  DOI: 10.1007/978-3-031-50040-4_2
• Policy recommendations to ensure that research software is openly accessible and reusable
  Erin C. McKiernan, Lorena Barba, Philip E. Bourne, Caitlin Carter, Zach Chandler, Sayeed Choudhury, Stephen Jacobs, Daniel S. Katz, Stefanie Lieggi, Beth Plale, Greg Tananbaum
  PLOS Biology, 21(7), pp. e3002204, 2023
  DOI: 10.1371/journal.pbio.3002204
• Grand challenges in bioinformatics education and training
  Esra Büşra Işık, Michelle D. Brazas, Russell Schwartz, Bruno Gaeta, Patricia M. Palagi, Celia W. G. van Gelder, Prashanth Suravajhala, Harpreet Singh, Sarah L. Morgan, Hilyatuz Zahroh, Maurice Ling, Venkata P. Satagopam, Annette McGrath, Kenta Nakai, Tin Wee Tan, Ge Gao, Nicola Mulder, Christian Schönbach, Yun Zheng, Javier De Las Rivas, Asif M. Khan
  Nature Biotechnology, 41(8), pp. 1171--1174, 2023
  DOI: 10.1038/s41587-023-01891-9
• Softalias-KG: Reconciling Software Mentions in Scientific Literature.
  Esteban González-Guardia, Hector Lopez, Daniel Garijo
  ISWC (Posters/Demos/Industry), 2023
• Soft-Search: Two Datasets to Study the Identification and Production of Research Software
  Eva Maxfield Brown, Lindsey Schwartz, Richard Lewei Huang, Nicholas Weber
  2023
  DOI: 10.48550/ARXIV.2302.14177
• Making Bioinformatics Training Events and Material More Discoverable Using TeSS, the ELIXIR Training Portal
  Finn Bacall, Aitor Apaolaza, Munazah Andrabi, Chris Child, Carole Goble, Olivier Sand, Alexander Botzki
  Current Protocols, 3(2), 2023
  DOI: 10.1002/cpz1.682
• An Open Community-Driven Model For Sustainable Research Software: Sustainable Research Software Institute
  Gregory R. Watson, Addi Malviya-Thakur, Daniel S. Katz, Elaine M. Raybourn, Bill Hoffman, Dana Robinson, John Kellerman, Clark Roundy
  2023
  DOI: 10.48550/ARXIV.2308.14953
• Lessons in FAIR software from the Community Surface Dynamics Modeling System
  Gregory Tucker, Albert Kettner, Eric Hutton, Mark Piper, Tian Gan, Benjamin Campforts, Irina Overeem, Matthew Rossi
  2023
  DOI: 10.5194/egusphere-egu23-3711
• 3. Helmholtz Open Science Forum Forschungssoftware. Helmholtz Open Science Briefing
  Heinz Pampel, Lea Maria Ferguson, Stephan Druskat, Uwe Konrad, Martin Hammitzsch, Christian Meeßen, David Schäfer, Robert Speck, Markus Diesmann, Achim Streit, Rene Caspart
  2023
  DOI: 10.48440/OS.HELMHOLTZ.057
• Establishing a national research software award
  Isabelle Blanc Catala, Roberto Di Cosmo, Mathieu Giraud, Daniel Le Berre, Violaine Louvet, Sophie Renaudin
  Open Research Europe, 3, pp. 185, 2023
  DOI: 10.12688/openreseurope.16069.1
• The in silico lab: Improving academic code using lessons from biology
  Jason Y. Cain, Jessica S. Yu, Neda Bagheri
  Cell Systems, 14(1), pp. 1--6, 2023
  DOI: 10.1016/j.cels.2022.11.006
• Revisiting the reproducibility of empirical software engineering studies based on data retrieved from development repositories
  Jesus M. Gonzalez-Barahona, Gregorio Robles
  Information and Software Technology, 164, pp. 107318, 2023
  DOI: 10.1016/j.infsof.2023.107318
• Professionalization of Research Computing and Data: An Expanded Agenda
  Joel Cutcher-Gershenfeld, Torey Battelle, Dana Brunson, Thomas Cheatham, Jacob Fosso Tande, Douglas Jennewein, Julie Ma, Lauren A. Michael, Timothy Middelkoop, Henry Neeman, Patrick Schmitz
  Practice and Experience in Advanced Research Computing, 2023
  DOI: 10.1145/3569951.3593610
• Better Research Software Tools to Elevate the Rate of Scientific Discovery – or why we need to invest in research software engineering
  Joran Deschamps, Damian Dalle Nogare, Florian Jug
  2023
  DOI: 10.48550/ARXIV.2307.03934
• Implementation of micro-credentials in higher education: A systematic literature review
  Kamrul Ahsan, Suraiyah Akbar, Booi Kam, Muhammad Dan-Asabe Abdulrahman
  Education and Information Technologies, 2023
  DOI: 10.1007/s10639-023-11739-z
• Human factors in industrial research software engineering
  Katharina Dworatzyk, Tobias Schlauch
  The PASC23 Conference - Minisymposium Code complete and more: Emerging efforts to improve software quality, 2023
  https://elib.dlr.de/195820/
• Earth beyond six of nine planetary boundaries
  Katherine Richardson, Will Steffen, Wolfgang Lucht, Jørgen Bendtsen, Sarah E. Cornell, Jonathan F. Donges, Markus Drüke, Ingo Fetzer, Govindasamy Bala, Werner von Bloh, Georg Feulner, Stephanie Fiedler, Dieter Gerten, Tom Gleeson, Matthias Hofmann, Willem Huiskamp, Matti Kummu, Chinchu Mohan, David Nogués-Bravo, Stefan Petri, Miina Porkka, Stefan Rahmstorf, Sibyll Schaphoff, Kirsten Thonicke, Arne Tobian, Vili Virkki, Lan Wang-Erlandsson, Lisa Weber, Johan Rockström
  Science Advances, 9(37), pp. eadh2458, 2023
  DOI: 10.1126/sciadv.adh2458
• Bioschemas training profiles: A set of specifications for standardizing training information to facilitate the discovery of training programs and resources
  Leyla Jael Castro, Patricia M. Palagi, Niall Beard, Teresa K. Attwood, Michelle D. Brazas
  PLOS Computational Biology, 19(6), pp. e1011120, 2023
  DOI: 10.1371/journal.pcbi.1011120
• A cast of thousands: How the IDEAS Productivity project has advanced software productivity and sustainability
  Lois Curfman McInnes, Michael Heroux, David E. Bernholdt, Anshu Dubey, Elsa Gonsiorowski, Rinku Gupta, Osni Marques, J. David Moulton, Hai Ah Nam, Boyana Norris, Elaine M. Raybourn, Jim Willenbring, Ann Almgren, Ross Bartlett, Kita Cranfill, Stephen Fickas, Don Frederick, William Godoy, Patricia Grubel, Rebecca Hartman-Baker, Axel Huebl, Rose Lynch, Addi Malviya Thakur, Reed Milewicz, Mark C. Miller, Miranda Mundt, Erik Palmer, Suzanne Parete-Koon, Megan Phinney, Katherine Riley, David M. Rogers, Ben Sims, Deborah Stevens, Gregory R. Watson
  2023
  DOI: 10.48550/ARXIV.2311.02010
• GREENER principles for environmentally sustainable computational science
  Loïc Lannelongue, Hans-Erik G. Aronson, Alex Bateman, Ewan Birney, Talia Caplan, Martin Juckes, Johanna McEntyre, Andrew D. Morris, Gerry Reilly, Michael Inouye
  Nature Computational Science, 3(6), pp. 514--521, 2023
  DOI: 10.1038/s43588-023-00461-y
• Shared metadata for data-centric materials science
  Luca M. Ghiringhelli, Carsten Baldauf, Tristan Bereau, Sandor Brockhauser, Christian Carbogno, Javad Chamanara, Stefano Cozzini, Stefano Curtarolo, Claudia Draxl, Shyam Dwaraknath, Ádám Fekete, James Kermode, Christoph T. Koch, Markus Kühbach, Alvin Noe Ladines, Patrick Lambrix, Maja-Olivia Himmer, Sergey V. Levchenko, Micael Oliveira, Adam Michalchuk, Ronald E. Miller, Berk Onat, Pasquale Pavone, Giovanni Pizzi, Benjamin Regler, Gian-Marco Rignanese, Jörg Schaarschmidt, Markus Scheidgen, Astrid Schneidewind, Tatyana Sheveleva, Chuanxun Su, Denis Usvyat, Omar Valsson, Christof Wöll, Matthias Scheffler
  Scientific Data, 10(1), 2023
  DOI: 10.1038/s41597-023-02501-8
• Teaching open and reproducible scholarship: a critical review of the evidence base for current pedagogical methods and their outcomes
  Madeleine Pownall, Flávio Azevedo, Laura M. König, Hannah R. Slack, Thomas Rhys Evans, Zoe Flack, Sandra Grinschgl, Mahmoud M. Elsherif, Katie A. Gilligan-Lee, Catia M. F. de Oliveira, Biljana Gjoneska, Tamara Kalandadze, Katherine Button, Sarah Ashcroft-Jones, Jenny Terry, Nihan Albayrak-Aydemir, Filip Děchtěrenko, Shilaan Alzahawi, Bradley J. Baker, Merle-Marie Pittelkow, Lydia Riedl, Kathleen Schmidt, Charlotte R. Pennington, John J. Shaw, Timo Lüke, Matthew C. Makel, Helena Hartmann, Mirela Zaneva, Daniel Walker, Steven Verheyen, Daniel Cox, Jennifer Mattschey, Tom Gallagher-Mitchell, Peter Branney, Yanna Weisberg, Kamil Izydorczak, Ali H. Al-Hoorie, Ann-Marie Creaven, Suzanne L. K. Stewart, Kai Krautter, Karen Matvienko-Sikar, Samuel J. Westwood, Patrícia Arriaga, Meng Liu, Myriam A. Baum, Tobias Wingen, Robert M. Ross, Aoife O'Mahony, Agata Bochynska, Michelle Jamieson, Myrthe Vel Tromp, Siu Kit Yeung, Martin R. Vasilev, Amélie Gourdon-Kanhukamwe, Leticia Micheli, Markus Konkol, David Moreau, James E. Bartlett, Kait Clark, Gwen Brekelmans, Theofilos Gkinopoulos, Samantha L. Tyler, Jan Philipp Röer, Zlatomira G. Ilchovska, Christopher R. Madan, Olly Robertson, Bethan J. Iley, Samuel Guay, Martina Sladekova, Shanu Sadhwani, FORTT
  Royal Society Open Science, 10(5), pp. 221255, 2023
  DOI: 10.1098/rsos.221255
• Automated Software Metadata Conversion and Publication Based on CodeMeta
  Marie ; Klar, Jochen ; Stary, Tomas ; Loewe, Axel Houillon
  2023
  DOI: 10.11588/HEIDOK.00033137
• Supporting Software Development Processes for Academia with GitLab
  Marius Politze, Uta Christoph, Bernd Decker, Petar Hristov, Ilona Lang, Marcel Nellesen, M Amin Yazdi
  Proceedings of European University, 95, pp. 229--238, 2023
• Toward Research Software Engineering Research
  Michael Felderer, Michael Goedicke, Lars Grunske, Wilhelm Hasselbring, Bernhard Rumpe
  2023
  https://api.semanticscholar.org/CorpusID:259372928
• Developing a Metadata Profile for Higher Education OER Repositories
  Michael Menzel
  Distributed Learning Ecosystems, pp. 263--278, 2023
  DOI: 10.1007/978-3-658-38703-7_14
• Software as a first class output in the scholarly ecosystem
  Morane Gruenpeter
  2023
  DOI: 10.5281/ZENODO.7964043
• Can software metrics improve (research) software quality?
  Neil Chue Hong
  2023
  DOI: 10.6084/m9.figshare.22186417
• D5.2 - Metrics for automated FAIR software assessment in a disciplinary context
  Neil Chue Hong, Elena Breitmoser, Mario Antonioletti, Joy Davidson, Daniel Garijo, Alejandra Gonzalez-Beltran, Morane Gruenpeter, Robert Huber, Clement Jonquet, Mike priddy, John Shepeherdson, Maaike Verburg, Chris Wood
  2023
  DOI: 10.5281/ZENODO.10047400
• Afterlife: the post-research affect and effect of software
  Nicolas E Gold, Ian Lawson, Neil P Oxtoby
  Research Ethics, 19(4), pp. 433--448, 2023
  DOI: 10.1177/17470161231178450
• Machine-Actionable Metadata for Software and Software Management Plans for NFDI
  Olga Giraldo, Danilo Dessi, Stefan Dietze, Dietrich Rebholz-Schuhmann, Leyla Jael Castro
  Proceedings of the Conference on Research Data Infrastructure, 1, 2023
  DOI: 10.52825/cordi.v1i.279
• A metadata analysis for machine-actionable Software Management Plans.
  Olga L Giraldo, Renato Alves, Dimitrios Bampalikis, José M Fernández, Eva Martin Del Pico, Fotis E Psomopoulos, Nelson Quiñones, Dhwani Solanki, Allegra Via, Leyla Jael Castro
  SWAT4HCLS, pp. 145--146, 2023
• Seeking Enlightenment: Incorporating Evidence-Based Practice Techniques in a Research Software Engineering Team
  Reed Milewicz, Jon Bisila, Miranda Mundt, Joshua Teves
  2023
  DOI: 10.5281/ZENODO.10420969
• Towards Evidence-Based Software Quality Practices for Reproducibility: Preliminary Results and Research Directions
  Reed Milewicz, Miranda Mundt
  Proceedings of the 2023 ACM Conference on Reproducibility and Replicability, 2023
  DOI: 10.1145/3589806.3600040
• Building and sustaining a community resource for best practices in scientific software: The story of BSSw. io
  Rinku Gupta, David E Bernholdt, Roscoe A Bartlett, Patricia A Grubel, Michael A Heroux, LC McInnes, MC Miller, K Salim, J Shuler, D Stevens, others
  Preprint, submitted to IEEE CiSE, https://doi.org/10.6084/m9.figshare, 25143671, 2023
• Defining the roles of research software
  Rob van Nieuwpoort, Daniel S. Katz
  2023
  DOI: 10.54900/9akm9y5-5ject5y
• Development of an Austrian OER Certification for Higher Education Institutions and Their Employees
  Sandra Schön, Martin Ebner, Elfriede Berger, Gerhard Brandhofer, Sarah Edelsbrunner, Ortrun Gröblinger, Claudia Hackl, Tanja Jadin, Michael Kopp, Kristina Neuböck, Judith Proinger, Alexander Schmölz, Hans-Peter Steinbacher
  Distributed Learning Ecosystems, pp. 161--182, 2023
  DOI: 10.1007/978-3-658-38703-7_9
• Galaxy Training: A powerful framework for teaching!
  Saskia Hiltemann, Helena Rasche, Simon Gladman, Hans-Rudolf Hotz, Delphine Larivière, Daniel Blankenberg, Pratik D. Jagtap, Thomas Wollmann, Anthony Bretaudeau, Nadia Goué, Timothy J. Griffin, Coline Royaux, Yvan Le Bras, Subina Mehta, Anna Syme, Frederik Coppens, Bert Droesbeke, Nicola Soranzo, Wendi Bacon, Fotis Psomopoulos, Cristóbal Gallardo-Alba, John Davis, Melanie Christine Föll, Matthias Fahrner, Maria A. Doyle, Beatriz Serrano-Solano, Anne Claire Fouilloux, Peter van Heusden, Wolfgang Maier, Dave Clements, Florian Heyl, Galaxy Training Network, Björn Grüning, Bérénice Batut
  PLOS Computational Biology, 19(1), pp. e1010752, 2023
  DOI: 10.1371/journal.pcbi.1010752
• Sustainability is Stratified: Toward a Better Theory of Sustainable Software Engineering
  Sean McGuire, Erin Shultz, Bimpe Ayoola, Paul Ralph
  2023
  DOI: 10.48550/ARXIV.2301.11129
• Journal Production Guidance for Software and Data Citations
  Shelley Stall, Geoffrey Bilder, Matthew Cannon, Neil Chue Hong, Scott Edmunds, Christopher C. Erdmann, Michael Evans, Rosemary Farmer, Patricia Feeney, Michael Friedman, Matthew Giampoala, R. Brooks Hanson, Melissa Harrison, Dimitris Karaiskos, Daniel S. Katz, Viviana Letizia, Vincent Lizzi, Catriona MacCallum, August Muench, Kate Perry, Howard Ratner, Uwe Schindler, Brian Sedora, Martina Stockhause, Randy Townsend, Jake Yeston, Timothy Clark
  Scientific Data, 10(1), 2023
  DOI: 10.1038/s41597-023-02491-7
• Towards Research Software-ready Libraries: Forschungssoftware in Bibliotheken
  Stephan Druskat, Oliver Bertuch, Alexander Struck
  ABI Technik, 43(3), pp. 168--178, 2023
  DOI: 10.1515/abitech-2023-0031
• The four elements of achieving research software sustainability for long tail projects
  Stephan Druskat, Thomas Krause
  2023
  DOI: 10.5281/ZENODO.7654778
• The Citation File Format: Providing citation metadata for research software
  Stephan Druskat
  2023
  DOI: 10.5281/ZENODO.7655140
• HERMES: Easing the path to FAIR software publications
  Stephan Druskat, Oliver Bertuch, Oliver Knodel, Michael Meinel, Guido Juckeland, Tobias Schlauch, Jeffrey Kelling, David Pape
  2023
  DOI: 10.5281/ZENODO.7654819
• HERMES: Automating software publication with rich metadata
  Stephan Druskat
  2023
  DOI: 10.5281/ZENODO.7963967
• And then there were users: Designing and implementing governance for open research software projects
  Stephan Druskat, Jurriaan H. Spaaks
  2023
  DOI: 10.5281/ZENODO.8304229
• Towards Improved Findability of Energy Research Software by Introducing a Metadata-based Registry
  Stephan Ferenz, Astrid Nieße
  2023
• The ESCAPE Open-source Software and Service Repository
  Thomas Vuillaume, Mohammad Al-Turany, Matthias Füßling, Tamas Gal, Enrique Garcia, Kay Graf, Gareth Hughes, Mark Kettenis, Dmytro Kresan, Jutta Schnabel, Christian Tacke, Marjolein Verkouter
  Open Research Europe, 3, pp. 46, 2023
  DOI: 10.12688/openreseurope.15692.2
• A sustainable infrastructure concept for improved accessibility, reusability, and archival of research software
  Timo Koch, Dennis Gläser, Anett Seeland, Sarbani Roy, Katharina Schulze, Kilian Weishaupt, David Boehringer, Sibylle Hermann, Bernd Flemisch
  2023
  DOI: 10.48550/ARXIV.2301.12830
• Towards a Critical Open-Source Software Database
  Tobias Dam, Lukas Daniel Klausner, Sebastian Neumaier
  Companion Proceedings of the ACM Web Conference 2023, pp. 156--159, 2023
  DOI: 10.1145/3543873.3587336
• Software ist kein Beiprodukt! Nachhaltige Forschungssoftware durch Software-Management-Pläne
  Yves Vincent Grossmann, Michael Franke
  b.i.t.online, 26(5), pp. 457--463, 2023
  https://www.b-i-t-online.de/heft/2023-05-fachbeitrag-grossmann.pdf

2022

• Towards a Software Development Framework for Interconnected Science Ecosystems
  Addi Malviya Thakur, Seth Hitefield, Marshall McDonnell, Matthew Wolf, Richard Archibald, Lance Drane, Kevin Roccapriore, Maxim Ziatdinov, Jesse McGaha, Robert Smith, others
  2022
• Research Software Engineering at Oak Ridge National Laboratory
  Addi Malviya-Thakur, David E. Bernholdt, William F. Godoy, Gregory R. Watson, Mathieu Doucet, Mark A. Coletti, David M. Rogers, Marshall McDonnell, Jay Jay Billings, Barney Maccabe
  Computing in Science & Engineering, 24(5), pp. 14--23, 2022
  DOI: 10.1109/mcse.2023.3260211
• Improving bioinformatics software quality through incorporation of software engineering practices
  Adeeb Noor
  PeerJ Computer Science, 8, pp. e839, 2022
  DOI: 10.7717/peerj-cs.839
• GitQ- towards using badges as visual cues for GitHub projects
  Akhila Sri Manasa Venigalla, Kowndinya Boyalakuntla, Sridhar Chimalakonda
  Proceedings of the 30^th IEEE/ACM International Conference on Program Comprehension (ICPC 2022), pp. 157--161, 2022
  DOI: 10.1145/3524610.3527876
• Creation of a core competency framework for clinical informatics: From genesis to maintaining relevance
  Alan Davies, Alan Hassey, John Williams, Georgina Moulton
  International Journal of Medical Informatics, 168, pp. 104905, 2022
  DOI: 10.1016/j.ijmedinf.2022.104905
• How to be a Good Member of a Scientific Software Community [Article v1.0]
  Alan Grossfield
  Living Journal of Computational Molecular Science, 3(1), pp. 1473, 2022
  DOI: 10.33011/livecoms.3.1.1473
• It's your software! Get it cited the way you want!
  Alice Allen
  2022
  DOI: 10.48550/ARXIV.2212.12683
• Socioeconomic roots of academic faculty
  Allison C. Morgan, Nicholas LaBerge, Daniel B. Larremore, Mirta Galesic, Jennie E. Brand, Aaron Clauset
  Nature Human Behaviour, 6(12), pp. 1625--1633, 2022
  DOI: 10.1038/s41562-022-01425-4
• SusTrainable: Promoting Sustainability as a Fundamental Driver in Software Development Training and Education
  Ana Oprescu, Lukas Koedijk, Sander van Oostveen, Stephan Kok
  Teacher Training, pp. 27--35, 2022
  DOI: 10.48550/arXiv.2204.13993
• A FAIR Digital Object Lab Software Stack
  Andreas Pfeil, Thomas Jejkal, Sabrine Chelbi, Nicolas Blumenröhr
  Research Ideas and Outcomes, 8, 2022
  DOI: 10.3897/rio.8.e94408
• Architecting the future of software engineering
  Anita Carleton, Forrest Shull, Erin Harper
  Computer, 55(9), pp. 89--93, 2022
  DOI: 10.1109/MC.2022.3187912
• What Do We (Not) Know About Research Software Engineering?
  Anna-Lena Lamprecht, Carlos Martinez-Ortiz, Michelle Barker, Sadie L. Bartholomew, Justin Barton, Neil Chue Hong, Jeremy Cohen, Stephan Druskat, Jeremy Forest, Jean-Noël Grad, Daniel S. Katz, Robin Richardson, Robert Rosca, Douwe Schulte, Alexander Struck, Marion Weinzierl
  Journal of Open Research Software, 10, 2022
  DOI: 10.5334/jors.384
• Teaching computational genomics and bioinformatics on a high performance computing cluster--a primer
  Arun Sethuraman
  Biology Methods and Protocols, 7(1), 2022
  DOI: 10.1093/biomethods/bpac032
• From dual digitalization to digital learning space: Exploring the digital transformation of higher education
  Bendik Bygstad, Egil Øvrelid, Sten Ludvigsen, Morten Dæhlen
  Computers & Education, 182, pp. 104463, 2022
  DOI: 10.1016/j.compedu.2022.104463
• Ten simple rules for reporting a bug
  Benjamin C. Haller
  PLOS Computational Biology, 18(10), pp. e1010540, 2022
  DOI: 10.1371/journal.pcbi.1010540
• Hidden Figures - wo sind sie? Frauen in der Entwicklung von Forschungssoftware
  Bernadette Fritzsch
  CampusSource Tagung 2022, 2022
• Research Software and the people behind it
  Bernadette Fritzsch
  2022
  DOI: 10.5281/ZENODO.7092505
• Pots of Gold at the End of the Rainbow: What is Success for Open Source Contributors?
  Bianca Trinkenreich, Mariam Guizani, Igor Wiese, Tayana Conte, Marco Gerosa, Anita Sarma, Igor Steinmacher
  IEEE Transactions on Software Engineering, 48(10), pp. 3940--3953, 2022
  DOI: 10.1109/tse.2021.3108032
• Best Practice Guide: How to Find New Attendees for Training Courses
  CASTIEL, EuroCC Network
  Training Best Practice Seminar (CASTIEL), 2022
  https://www.eurocc-access.eu/wp-content/uploads/2022/04/20220401%5FBest%5FPractice%5FGuide-Training%5FBest%5FPractice%5FSeminar%5Ffinal.pdf
• (Research-)Software-Entwicklung für Non-IT'ler
  Carina Haupt
  OOP Digital 2022, 2022
  https://elib.dlr.de/148656/
• FAIR4RS: Adoption support
  Carlos Martinez-Ortiz, Daniel S. Katz, Anna-Lena Lamprecht, Michelle Barker, Axel Loewe, Anne Fouilloux, Jane Wyngaard, Daniel Garijo, Javier Moldon, Leyla Jael Castro, Daniel Wheeler, Joost Rutger Demian Albers, Allen Lee
  2022
  DOI: 10.5281/ZENODO.6258365
• How does software fit into the FDO landscape?
  Carlos Martinez-Ortiz, Carole Goble, Daniel Katz, Tom Honeyman, Paula Martinez, Michelle Barker, Leyla Jael Castro, Neil Chue Hong, Morane Gruenpeter, Jennifer Harrow, Anna-Lena Lamprecht, Fotis Psomopoulos
  Research Ideas and Outcomes, 8, 2022
  DOI: 10.3897/rio.8.e95724
• Ten simple rules for funding scientific open source software
  Carly Strasser, Kate Hertweck, Josh Greenberg, Dario Taraborelli, Elizabeth Vu
  PLOS Computational Biology, 18(11), pp. e1010627--e1010627, 2022
  DOI: 10.1371/journal.pcbi.1010627
• Why science needs more research software engineers
  Chris Woolston
  Nature, pp. d41586--022--01516--2, 2022
  DOI: 10.1038/d41586-022-01516-2
• Characterizing the US Research Computing and Data (RCD) Workforce
  Christina Maimone, Scott Yockel, Timothy Middelkoop, Ashley Stauffer, Chris Reidy
  2022
  DOI: 10.1145/3491418.3530289
• Testing Software Systems
  Christof Ebert, Divith Bajaj, Michael Weyrich
  IEEE Software, 39(4), pp. 8--17, 2022
  DOI: 10.1109/MS.2022.3166755
• SURESOFT: Towards Sustainable Research Software
  Christopher Blech, Nils Dreyer, Matthias Friebel, Christoph Jacob, Mostafa Shamil Jassim, Leander Jehl, Rüdiger Kapitza, Manfred Krafczyk, Thomas Kürner, Sabine Christine Langer, Jan Linxweiler, Mohammad Mahhouk, Sven Marcus, Ines Messadi, Sören Peters, Jan-Marc Pilawa, Harikrishnan K. Sreekumar, Robert Strötgen, Katrin Stump, Arne Vogel, Mario Wolter
  2022
  DOI: 10.24355/dbbs.084-202210121528-0
• ROSA22 - Citing and Improving the Discoverability of Your Research Software
  Christopher Erdmann
  2022
  DOI: 10.5281/ZENODO.6536628
• Nine best practices for research software registries and repositories
  Daniel Garijo, Hervé Ménager, Lorraine Hwang, Ana Trisovic, Michael Hucka, Thomas Morrell, Alice Allen
  PeerJ Computer Science, 8, pp. e1023--e1023, 2022
  DOI: 10.7717/peerj-cs.1023
• The role of software in science: a knowledge graph-based analysis of software mentions in PubMed Central
  David Schindler, Felix Bensmann, Stefan Dietze, Frank Krüger
  PeerJ Computer Science, 8, pp. e835, 2022
  DOI: 10.7717/peerj-cs.835
• Bus factor in practice
  Elgun Jabrayilzade, Mikhail Evtikhiev, Eray Tüzün, Vladimir Kovalenko
  Proceedings of the 44^th International Conference on Software Engineering: Software Engineering in Practice (ICSE-SEIP '22), pp. 97--106, 2022
  DOI: 10.1145/3510457.3513082
• Transforming Trajectories for Women of Color in Tech
  Engineering, National Academies of Sciences, Medicine
  2022
  DOI: 10.17226/26345
• Taking the TU Delft Carpentries Workshops Online
  Esther Plomp, Emmy Tsang, Paula M. Martinez Lavanchy
  Journal of eScience Librarianship, 11(1), 2022
  DOI: 10.7191/jeslib.2022.1221
• FAIRsoft-A practical implementation of FAIR principles for research software
  Eva Martı\ʼn del Pico, ́ Josep Lluı\ ́and Capella-Gutiérrez, Salvador Gelpı
  bioRxiv, pp. 2022--05--2022--05, 2022
• Cognition in software engineering: a taxonomy and survey of a half-century of research
  Fabian Fagerholm, Michael Felderer, Davide Fucci, Michael Unterkalmsteiner, Bogdan Marculescu, Markus Martini, Lars Göran Wallgren Tengberg, Robert Feldt, Bettina Lehtelä, Balázs Nagyváradi, Jehan Khattak
  ACM Computing Surveys, 54(11s), 2022
  DOI: 10.1145/3508359
• ProvBench: A performance provenance capturing framework for heterogeneous research computing environments
  Fang (Cherry) Liu, Mehmet Belgin, Nuyun Zhang, Kevin Manalo, Ruben Lara, Christopher P. Stone, Paul Manno
  Concurrency and Computation: Practice and Experience, 2022
  DOI: 10.1002/cpe.6820
• Curriculum Development for FAIR Data Stewardship
  Francisca Oladipo, Sakinat Folorunso, Ezekiel Ogundepo, Obinna Osigwe, Akinyinka Akindele
  Data Intelligence, 4(4), pp. 991--1012, 2022
  DOI: 10.1162/dint_a_00183
• The European Bioinformatics Institute (EMBL-EBI) in 2021
  Gaia Cantelli, Alex Bateman, Cath Brooksbank, Anton I. Petrov, Rahuman S. Malik-Sheriff, Michele Ide-Smith, Henning Hermjakob, Paul Flicek, Rolf Apweiler, Ewan Birney, Johanna McEntyre
  Nucleic Acids Research, 50(D1), pp. D11--D19, 2022
  DOI: 10.1093/nar/gkab1127
• AI4SD Video: Reproducibility, Jupyter notebooks and associated research software engineering
  Hans Fangohr
  2022
  DOI: 10.5258/SOTON/AI3SD0269
• The Princeton University Research Software Engineering Group Model: Operational and Organizational Approaches
  Ian A. Cosden
  Computing in Science & Engineering, 24(5), pp. 24--31, 2022
  DOI: 10.1109/mcse.2023.3264113
• Research Software Engineers: Career Entry Points and Training Gaps
  Ian A. Cosden, Kenton McHenry, Daniel S. Katz
  2022
• An RSE Group Model: Operational and Organizational Approaches From Princeton University's Central Research Software Engineering Group
  Ian A. Cosden
  2022
  DOI: 10.48550/ARXIV.2210.16261
• Connecting the astronomical testbed community - the CAOTIC project: optimized teaching methods for software version control concepts
  Iva Laginja, Pablo Robles, Kevin Barjot, Lucie Leboulleux, Rebecca Jensen-Clem, Keira J. Brooks, Christopher Moriarty
  Adaptive Optics Systems VIII, 12185, pp. 121853A, 2022
  DOI: 10.1117/12.2629483
• Evaluating the Sustainability of Computational Science and Engineering Software: Empirical Observations
  James Willenbring, Gursimran Walia
  2022
• A survey of the state of the practice for research software in the United States
  Jeffrey C. Carver, Nic Weber, Karthik Ram, Sandra Gesing, Daniel S. Katz
  PeerJ Computer Science, 8, pp. e963, 2022
  DOI: 10.7717/peerj-cs.963
• Software Development Metrics With a Purpose
  Jesus M. Gonzalez-Barahona, Daniel Izquierdo-Cortazar, Gregorio Robles
  Computer, 55(4), pp. 66--73, 2022
  DOI: 10.1109/mc.2022.3145680
• Guidelines for collaborative development of sustainable data treatment software
  Joachim Wuttke, Stephen Cottrell, Miguel A. Gonzalez, Anders Kaestner, Anders Markvardsen, Thomas H. Rod, Piotr Rozyczko, Gagik Vardanyan
  Journal of Neutron Research, 24(1), pp. 33--72, 2022
  DOI: 10.3233/jnr-220002
• Amsterdam Declaration on Funding Research Software Sustainability
  Joris Van Eijnatten, Michelle Barker, Valentina Azzarà, Tom Bakker, Daniel S. Katz, Carlos Martinez-Ortiz, Maria J. Cruz, Veronica Pang
  2022
  DOI: 10.5281/ZENODO.7330542
• ¡Se puede entender cómo funcionan Git y GitHub!
  Julen Astigarraga, Verónica Cruz-Alonso
  Ecosistemas, 31(1), pp. 2332, 2022
  DOI: 10.7818/ecos.2332
• A survey of researchers' code sharing and code reuse practices, and assessment of interactive notebook prototypes
  Lauren Cadwallader, Iain Hrynaszkiewicz
  PeerJ, 10, pp. e13933, 2022
  DOI: 10.7717/peerj.13933
• Defining the role of open source software in research reproducibility
  Lorena A. Barba
  2022
• The ReSUS Project - Infrastructure for Sharing Research Software
  Markus Hirsch, Dorothea Iglezakis, Frank Leymann, Michael Zimmermann
  2022
  DOI: 10.11588/HEIBOOKS.979.C13737
• The Science Gateway Community Institute's Consulting Services Program: Lessons for Research Software Engineering Organizations
  Marlon Pierce, Michael Zentner, Maytal Dahan, Sandra Gesing, Claire Stirm, Linda Bailey Hayden
  2022
• Towards efficient use of data, models and tools in food microbiology
  Matthias Filter, Maarten Nauta, Sara M. Pires, Laurent Guillier, Tasja Buschhardt
  Current Opinion in Food Science, pp. 100834, 2022
  DOI: 10.1016/j.cofs.2022.100834
• Research Software Science: Expanding the Impact of Research Software Engineering
  Michael A. Heroux
  2022
  DOI: 10.48550/ARXIV.2211.09034
• Research Software Science: Expanding the Impact of Research Software Engineering
  Michael A. Heroux
  Computing in Science & Engineering, 24(6), pp. 22--27, 2022
  DOI: 10.1109/mcse.2023.3260475
• Revisiting Secure Software Engineering for Research Software
  Michael Meinel, Martin Stoffers
  2022
  https://elib.dlr.de/188479/
• Introducing the FAIR Principles for research software
  Michelle Barker, Neil P. Chue Hong, Daniel S. Katz, Anna-Lena Lamprecht, Carlos Martinez-Ortiz, Fotis Psomopoulos, Jennifer Harrow, Leyla Jael Castro, Morane Gruenpeter, Paula Andrea Martinez, Tom Honeyman
  Scientific Data, 9(1), pp. 622--622, 2022
  DOI: 10.1038/s41597-022-01710-x
• Encouraging and Enabling Mutual Ownership in a RSE Community of Practice
  Miranda Mundt, Jonathan Bisila, Jonathan E. Guyer, Daniel Howard, Daniel S. Katz, Reed Milewicz, Henry Schreiner, Joshua Teves, Chris Wiswell
  2022
  https://tsapps.nist.gov/publication/get%5Fpdf.cfm?pub%5Fid=935856
• Working in Harmony: Towards Integrating RSEs into Multi-Disciplinary CSE Teams
  Miranda Mundt, Reed Milewicz
  2022
• For the Public Good: Connecting, Retaining, and Recognizing Current and Future RSEs at U.S. National Research Laboratories and Agencies
  Miranda R. Mundt, Keith Beattie, Jonathan Bisila, Charles R. Ferenbaugh, William F. Godoy, Rinku Gupta, Jonathan E. Guyer, Miriam Kiran, Addi Malviya-Thakur, Reed Milewicz, Benjamin H. Sims, Vanessa Sochat, Joshua B. Teves
  Computing in Science & Engineering, 24(6), pp. 6--13, 2022
  DOI: 10.1109/mcse.2023.3256759
• Testing Research Software: A Survey
  Nasir U. Eisty, Jeffrey C. Carver
  2022
• On the Lack of Recognition of Software Artifacts and IT Infrastructure in Educational Technology Research
  Natalie Kiesler, Daniel Schiffner
  2022
  DOI: 10.18420/DELFI2022-034
• Research Software Publication Policy Case Study
  Nic Weber
  2022
• Evaluating research computing training and support as part of a broader digital research infrastructure needs assessment
  Nick Rochlin, Jeff Gardner, Elizabeth Kinney
  2022
  DOI: 10.1145/3491418.3530295
• Toward practical transparent verifiable and long-term reproducible research using Guix
  Nicolas Vallet, David Michonneau, Simon Tournier
  Scientific Data, 9(1), 2022
  DOI: 10.1038/s41597-022-01720-9
• OSEC2022. Proceedings of the Paris Open Science EuropeanConference
  Open Science European Conference
  2022
  DOI: 10.4000/books.oep.15829
• A quality-based approach for research software and services
  Pablo Orviz, Samuel Bernardo, Mario David, Diana Naranjo, Germán Moltó, Miguel Caballer, Isabel Campos, Jorge Gomes, Valentin Kozlov, Borja Esteban Sanchis, Marcus Hardt, Peter Braesicke, Tobias Kerzenmacher, Ignacio Blanquer
  2022
• Exchanging Best Practices for Supporting Computational and Data-Intensive Research, The Xpert Network
  Parinaz Barakhshan, Rudolf Eigenmann
  2022
  DOI: 10.1145/3491418.3530293
• Right to Respect for Private and Family Life, Home and Correspondence: A Practical Guide to the Article 8 Case-Law of the European Court of Human Rights
  Päivi Hirvelä, Satu Heikkilä
  2022
  DOI: 10.1017/9781839703232
• Datenpolitik, Open Science und Dateninfrastrukturen: Aktuelle Entwicklungen im europäischen Raum
  Rat für Informationsinfrastrukturen RfII
  2022
• Advocating for Equality of Contribution: The Research Software Engineer (RSE)
  Rebecca Ringuette, Nicholas Murphy, Maksym Petrenko, Kevin Reardon, Josh Rigler, Leila Mays, Silvina Guidoni, Darren De Zeeuw, Robert Weigel, Thomas Y. Chen, others
  Solar and Space Physics (Heliophysics) Decadal Survey, 2022
• A Secure Future for Open-Source Computational Science and Engineering
  Reed Milewicz, Jeffrey Carver, Samuel Grayson, Travis Atkison
  2022
  DOI: 10.48550/ARXIV.2211.06343
• Automated and manual testing as part of the research software development process of RCE
  Robert Mischke, Kathrin Schaffert, Dominik Schneider, Alexander Weinert
  2022
• Understanding Factors that Influence Research Computing and Data Careers
  Shafaq Chaudhry, Arman Pazouki, Patrick Schmitz, Elizabett Hillery, Kerk Kee
  2022
  DOI: 10.1145/3491418.3530292
• Documenting research software in engineering science
  Sibylle Hermann, Jörg Fehr
  Scientific Reports, 12(1), 2022
  DOI: 10.1038/s41598-022-10376-9
• Documenting Research Software in Engineering Science
  Sibylle Hermann, Jörg Fehr
  2022
  DOI: 10.21203/rs.3.rs-1239393/v1
• FAIRSECO: An infrastructure for measuring impact of research software
  Slinger Jansen, Elena Baninemeh, Siamak Farshidi
  2022
• What unique knowledge and experiences do healthcare professionals have working in clinical informatics?
  Sophie Brouat, Clare Tolley, David W. Bates, James Jenson, Sarah P. Slight
  Informatics in Medicine Unlocked, 32, pp. 101014, 2022
  DOI: 10.1016/j.imu.2022.101014
• Digging Deeper into the State of the Practice for Domain Specific Research Software
  Spencer Smith, Peter Michalski
  Computational Science – ICCS 2022, pp. 545--559--545--559, 2022
  DOI: 10.1007/978-3-031-08760-8_45
• Digging deeper into the state of the practice for domain specific research software
  Spencer Smith, Peter Michalski
  Computational Science – ICCS 2022, 13353, pp. 545--559, 2022
• Software publications with rich metadata: state of the art, automated workflows and HERMES concept
  Stephan Druskat, Oliver Bertuch, Guido Juckeland, Oliver Knodel, Tobias Schlauch
  2022
• Bringing bioinformatics to schools with the 4273pi project
  Stevie A. Bain, Heleen Plaisier, Felicity Anderson, Nicola Cook, Kathryn Crouch, Thomas R. Meagher, Michael G. Ritchie, Edward W. J. Wallace, Daniel Barker
  PLOS Computational Biology, 18(1), pp. e1009705, 2022
  DOI: 10.1371/journal.pcbi.1009705
• Research Software vs. Research Data I: Towards a Research Data definition in the Open Science context
  Teresa Gomez-Diaz, Tomas Recio
  F1000Research, 11, pp. 118, 2022
  DOI: 10.12688/f1000research.78195.1
• Research Software and Research Data: dissemination, evaluation and reusability in the Open Science context
  Teresa Gomez-Diaz, Tomas Recio
  2022
  DOI: 10.5281/ZENODO.6778872
• Research Software vs. Research Data II: Protocols for Research Data dissemination and evaluation in the Open Science context
  Teresa Gomez-Diaz, Tomas Recio
  F1000Research, 11, pp. 117--117, 2022
  DOI: 10.12688/f1000research.78459.1
• Digital Badges in Higher Education: The Perspective of Employers in Upper Austria
  Thomas Fischer, Ursula Niederlander, Martin Stabauer
  2022 20^th International Conference on Information Technology Based Higher Education and Training (ITHET), 2022
  DOI: 10.1109/ithet56107.2022.10031743
• Building the Research Innovation Workforce: Challenges and Recommendations from a Virtual Workshop to Advance the Research Computing Community
  Thomas Hacker, Preston Smith, Dana Brunson, Lisa Arafune, Thomas Cheatham, Ewa Deelman
  2022
  DOI: 10.1145/3491418.3530288
• Open Science for Computer Simulation
  Thomas Monks, Alison Harper, Anastasia Anagnostou, Simon J. E. Taylor
  2022
  DOI: 10.31219/osf.io/zpxtm
• A Research Software Engineering Workflow for Computational Science and Engineering
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  2022
• Research Software Development at Helmholtz
  Uwe Konrad
  2022
• The Research Software Encyclopedia: A Community Framework to Define Research Software
  Vanessa Sochat, Nicholas May, Ian Cosden, Carlos Martinez-Ortiz, Sadie Bartholomew
  Journal of Open Research Software, 10, 2022
  DOI: 10.5334/jors.359
• CiteLang: Modeling the Research Software Ecosystem
  Vanessa Sochat
  Journal of Open Source Software, 7(77), pp. 4458--4458, 2022
  DOI: 10.21105/joss.04458
• Always-Sustainable Software Security
  Vincent Lefebvre, Gianni Santinelli
  2022
  DOI: 10.1109/netsoft54395.2022.9844077
• Evidence and Knowledge from Computer Simulation
  Wendy S. Parker
  Erkenntnis, 87(4), pp. 1521--1538, 2022
  DOI: 10.1007/s10670-020-00260-1
• Giving Research Software Engineers a Larger Stage Through the Better Scientific Software Fellowship
  William F. Godoy, Ritu Arora, Keith Beattie, David E. Bernholdt, Sarah E. Bratt, Daniel S. Katz, Ignacio Laguna, Amiya K. Maji, Addi Malviya-Thakur, Rafael M. Mudafort, Nitin Sukhija, Damian Rouson, Cindy Rubio-González, Karan Vahi
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  DOI: 10.1109/mcse.2023.3253847
• Giving RSEs a Larger Stage through the Better Scientific Software Fellowship
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  2022
  DOI: 10.48550/ARXIV.2211.07436
• Why open source community building makes your research software better (and what to expect when you get started)
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  2022
  DOI: 10.5281/ZENODO.6545452

2021

• In-code citation practices in open research software libraries
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  Journal of Informetrics, 15(2), pp. 101139--101139, 2021
  DOI: 10.1016/j.joi.2021.101139
• Dynamics of Scientific Software Teams
  Addi Malviya Thakur, Greg Watson
  2021
  DOI: 10.13140/RG.2.2.14117.63201
• Expanding the Scope of Statistical Computing: Training Statisticians to Be Software Engineers
  Alex Reinhart, Christopher R. Genovese
  Journal of Statistics and Data Science Education, 29(sup1), pp. S7--S15, 2021
  DOI: 10.1080/10691898.2020.1845109
• SciCodes: Astronomy Research Software and Beyond
  Alice Allen
  2021
  DOI: https://doi.org/10.48550/arXiv.2111.14278
• Data models, representation and adequacy-for-purpose
  Alisa Bokulich, Wendy Parker
  European Journal for Philosophy of Science, 11(1), pp. 31, 2021
  DOI: 10.1007/s13194-020-00345-2
• Emulation practices for software preservation in libraries, archives, and museums
  Amelia Acker
  Journal of the Association for Information Science and Technology, 72(9), pp. 1148--1160--1148--1160, 2021
  DOI: 10.1002/asi.24482
• Jenseits des Computational Turn: Methodenentwicklung und Forschungssoftware in der Kommunikations- und Medienwissenschaft – zur Einführung in das Themenheft
  Andreas Hepp, Wiebke Loosen, Uwe Hasebrink
  Medien & Kommunikationswissenschaft, 69(1), pp. 3--24--3--24, 2021
  DOI: 10.5771/1615-634x-2021-1-3-1
• TU Delft Research Software Policy
  Anton Akhmerov, Merlijn Bazuine, Julie Beardsell, Rianne van den Bogerd, Susan Branchett, Alastair Dunning, Meta Keijzer-de Ruijter, Maria Cruz, Paula Martinez-Lavanchy, Mark Schenk, Margot Spaargaren, Marta Teperek
  2021
  DOI: 10.5281/ZENODO.4629661
• The Impact of Human Factors on Software Sustainability
  Asif Imran, Tevfik Kosar
  Software Sustainability, pp. 287--300, 2021
  DOI: 10.1007/978-3-030-69970-3_12
• Ten simple rules for organizing a bioinformatics training course in low- and middle-income countries
  Benjamin Moore, Patricia Carvajal-López, Paballo Abel Chauke, Marco Cristancho, Victoria Dominguez Del Angel, Selene L. Fernandez-Valverde, Amel Ghouila, Piraveen Gopalasingam, Fatma Zahra Guerfali, Alice Matimba, Sarah L. Morgan, Guilherme Oliveira, Verena Ras, Alejandro Reyes, Javier De Las Rivas, Nicola Mulder
  PLOS Computational Biology, 17(8), pp. e1009218, 2021
  DOI: 10.1371/journal.pcbi.1009218
• Forschungssoftware im Kontext von guter wissenschaftlicher Praxis, Open Science und der Helmholtz Digitalisierungsstrategie
  Bernadette Fritzsch, Uwe Konrad
  2021
• The roles of code in biology
  Brendan Lawlor, Roy D. Sleator
  Science Progress, 104(2), pp. 003685042110105--003685042110105, 2021
  DOI: 10.1177/00368504211010570
• CiteAs: Better Software through Sociotechnical Change for Better Software Citation
  Caifan Du, Johanna Cohoon, Jason Priem, Heather Piwowar, Casey Meyer, James Howison
  Companion Publication of the 2021 Conference on Computer Supported Cooperative Work and Social Computing, 2021
  DOI: 10.1145/3462204.3482889
• Not teaching software engineering standards to future software engineers – malpractice?
  Claude Y. Laporte, Mirna Munoz
  Computer, 54(5), pp. 81--88, 2021
  DOI: 10.1109/MC.2021.3064438
• Software Sustainability: Beyond the Tower of Babel
  Colin C. Venters, Sedef Akinli Kocak, Stefanie Betz, Ian Brooks, Rafael Capilla, Ruzanna Chitchyan, Leticia Duboc, Rogardt Heldal, Ana Moreira, Shola Oyedeji, Birgit Penzenstadler, Jari Porras, Norbert Seyff
  2021 IEEE/ACM International Workshop on Body of Knowledge for Software Sustainability (BoKSS), 2021
  DOI: 10.1109/bokss52540.2021.00009
• Research Software Engineering with Python: Building software that makes research possible
  Damien Irving, Kate Hertweck, Luke Johnston, Joel Ostblom, Charlotte Wickham, Greg Wilson
  2021
  DOI: 10.1201/9781003143482
• Research Software Sustainability: Lessons Learned at NCSA
  Daniel Katz, Kenton Mchenry
  2021
  DOI: 10.24251/hicss.2021.873
• CODECHECK: an Open Science initiative for the independent execution of computations underlying research articles during peer review to improve reproducibility
  Daniel Nüst, Stephen J. Eglen
  F1000Research, 10, pp. 253--253, 2021
  DOI: 10.12688/f1000research.51738.2
• Recognizing the value of software: a software citation guide
  Daniel S. Katz, Neil P. Chue Hong, Tim Clark, August Muench, Shelley Stall, Daina Bouquin, Matthew Cannon, Scott Edmunds, Telli Faez, Patricia Feeney, Martin Fenner, Michael Friedman, Gerry Grenier, Melissa Harrison, Joerg Heber, Adam Leary, Catriona MacCallum, Hollydawn Murray, Erika Pastrana, Katherine Perry, Douglas Schuster, Martina Stockhause, Jake Yeston
  F1000Research, 9, pp. 1257--1257, 2021
  DOI: 10.12688/f1000research.26932.2
• A Fresh Look at FAIR for Research Software
  Daniel S. Katz, Morane Gruenpeter, Tom Honeyman, Lorraine Hwang, Mark D. Wilkinson, Vanessa Sochat, Hartwig Anzt, Carole Goble, for FAIR4RS Subgroup 1
  2021
  https://arxiv.org/abs/2101.10883v3
• The FAIR4RS team: Working together to make research software FAIR
  Daniel S. Katz, Michelle Barker, Neil P. Chue Hong, Leyla Jael Castro, Paula Andrea Martinez
  2021
  DOI: 10.5281/ZENODO.5037157
• Taking a fresh look at FAIR for research software
  Daniel S. Katz, Morane Gruenpeter, Tom Honeyman
  Patterns, 2(3), pp. 100222--100222, 2021
  DOI: 10.1016/j.patter.2021.100222
• Addressing Research Software Sustainability via Institutes
  Daniel S. Katz, Jeffrey C. Carver, Neil P. Chue Hong, Sandra Gesing, Simon Hettrick, Tom Honeyman, Karthik Ram, Nicholas Weber
  2021
  DOI: 10.1109/BoKSS52540.2021.00013
• When Scientific Software Meets Software Engineering
  Dorian Leroy, June Sallou, Johann Bourcier, Benoit Combemale
  Computer, 54(12), pp. 60--71, 2021
  DOI: 10.1109/mc.2021.3102299
• Who benefits from digital badges? Motivational precursors of digital badge usages in higher education
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  Current Psychology, 42(8), pp. 6629--6640, 2021
  DOI: 10.1007/s12144-021-02002-0
• Developing and Publishing Code for Trusted Research Environments: Best Practices and Ways of Working
  Ed Chalstrey
  2021
  DOI: 10.5281/zenodo.5675093
• Link-based approach to study scientific software usage: the case of VOSviewer
  Enrique Orduña-Malea, Rodrigo Costas
  Scientometrics, 126(9), pp. 8153--8186, 2021
  DOI: 10.1007/s11192-021-04082-y
• The future of software engineering: visions of 2025 and beyond
  Firoz Khan, R. Lakshmana Kumar, Seifedine Kadry, Yunyoung Nam
  International Journal of Electrical and Computer Engineering (IJECE), 11(4), pp. 3443--3450, 2021
  DOI: 10.11591/ijece.v11i4.pp3443-3450
• Developing open-source software for bioimage analysis: opportunities and challenges
  Florian Levet, Anne E. Carpenter, Kevin W. Eliceiri, Anna Kreshuk, Peter Bankhead, Robert Haase
  F1000Research, 10, pp. 302--302, 2021
  DOI: 10.12688/f1000research.52531.1
• Ten simple rules for quick and dirty scientific programming
  Gabriel Balaban, Ivar Grytten, Knut Dagestad Rand, Lonneke Scheffer, Geir Kjetil Sandve
  PLOS Computational Biology, 17(3), pp. e1008549--e1008549, 2021
  DOI: 10.1371/journal.pcbi.1008549
• Die Entwicklung von Forschungssoftware als praktische Interdisziplinarität
  Gerret von Nordheim, Lars Koppers, Karin Boczek, Jonas Rieger, Carsten Jentsch, Henrik Müller, Jörg Rahnenführer
  Medien & Kommunikationswissenschaft, 69(1), pp. 80--96, 2021
  DOI: 10.5771/1615-634x-2021-1-80
• Barely sufficient practices in scientific computing
  Graham Lee, Sebastian Bacon, Ian Bush, Laura Fortunato, David Gavaghan, Thibault Lestang, Caroline Morton, Martin Robinson, Philippe Rocca-Serra, Susanna-Assunta Sansone, Helena Webb
  Patterns, 2(2), pp. 100206--100206, 2021
  DOI: 10.1016/j.patter.2021.100206
• Ten simple rules on writing clean and reliable open-source scientific software
  Haley Hunter-Zinck, Alexandre Fioravante de Siqueira, Váleri N. Vásquez, Richard Barnes, Ciera C. Martinez
  PLOS Computational Biology, 17(11), pp. e1009481, 2021
  DOI: 10.1371/journal.pcbi.1009481
• An environment for sustainable research software in Germany and beyond: current state, open challenges, and call for action [version 2; peer review: 2 approved]
  Hartwig Anzt, Felix Bach, Stephan Druskat, Frank Löffler, Axel Loewe, Bernhard Y. Renard, Gunnar Seemann, Alexander Struck, Elke Achhammer, Piush Aggarwal, Franziska Appel, Michael Bader, Lutz Brusch, Christian Busse, Gerasimos Chourdakis, Piotr Wojciech Dabrowski, Peter Ebert, Bernd Flemisch, Sven Friedl, Bernadette Fritzsch, Maximilian D. Funk, Volker Gast, Florian Goth, Jean-Noël Grad, Jan Hegewald, Sibylle Hermann, Florian Hohmann, Stephan Janosch, Dominik Kutra, Jan Linxweiler, Thilo Muth, Wolfgang Peters-Kottig, Fabian Rack, Fabian H.C. Raters, Stephan Rave, Guido Reina, Malte Reißig, Timo Ropinski, Joerg Schaarschmidt, Heidi Seibold, Jan P. Thiele, Benjamin Uekermann, Stefan Unger, Rudolf Weeber
  F1000Research, 9(295), 2021
  DOI: 10.12688/f1000research.23224.2
• Crediting pull requests to open source research software as an academic contribution
  Hartwig Anzt, Eileen Kuehn, Goran Flegar
  Journal of Computational Science, 49, pp. 101278--101278, 2021
  DOI: 10.1016/j.jocs.2020.101278
• Science-Software Linkage: The Challenges of Traceability between Scientific Knowledge and Software Artifacts
  Hideaki Hata, Jin L. C. Guo, Raula Gaikovina Kula, Christoph Treude
  arXiv:2104.05891 [cs], 2021
  http://arxiv.org/abs/2104.05891
• Progress toward a comprehensive teaching approach to the FAIR data principles
  Hugh Shanahan, Nancy Hoebelheinrich, Angus Whyte
  Patterns, 2(10), pp. 100324, 2021
  DOI: 10.1016/j.patter.2021.100324
• A Practical Guide to Metabolomics Software Development
  Hui-Yin Chang, Sean M. Colby, Xiuxia Du, Javier D. Gomez, Maximilian J. Helf, Katerina Kechris, Christine R. Kirkpatrick, Shuzhao Li, Gary J. Patti, Ryan S. Renslow, Shankar Subramaniam, Mukesh Verma, Jianguo Xia, Jamey D. Young
  Analytical Chemistry, 93(4), pp. 1912--1923, 2021
  DOI: 10.1021/acs.analchem.0c03581
• The future of software engineering work
  Ipek Ozkaya
  IEEE Software, 38(5), pp. 3--6, 2021
  DOI: 10.1109/MS.2021.3089729
• Sustainable Research Software Hand-Over
  J. Fehr, C. Himpe, S. Rave, J. Saak
  Journal of Open Research Software, 9(1), pp. 5, 2021
  DOI: 10.5334/jors.307
• The US-RSE Association: Bringing Together Research Software Engineers
  Jeff Carver, Ian Cosden, Julia Damerow, Charles Ferenbaugh, Sandra Gesing, Chris Hill, Daniel S. Katz, Christina Maimone, Lance Parsons
  2021
  DOI: 10.17613/B7GT-VV31
• Sustaining Research Software via Research Software Engineers and Professional Associations
  Jeffrey C. Carver, Ian A. Cosden, Chris Hill, Sandra Gesing, Daniel S. Katz
  Proceedings of the 2021 IEEE/ACM International Workshop on Body of Knowledge for Software Sustainability (BoKSS), 2021
  DOI: 10.1109/bokss52540.2021.00016
• The Four Pillars of Research Software Engineering
  Jeremy Cohen, Daniel S. Katz, Michelle Barker, Neil Chue Hong, Robert Haines, Caroline Jay
  IEEE Software, 38(1), pp. 97--105, 2021
  DOI: 10.1109/MS.2020.2973362
• Effects of Gamification on Behavioral Change in Education: A Meta-Analysis
  Jihoon Kim, Darla M. Castelli
  International Journal of Environmental Research and Public Health, 18(7), pp. 3550, 2021
  DOI: 10.3390/ijerph18073550
• Learning to Fly: Development and Design of a Micro-Credentialing System for an Educator Preparation Program in the Absence of a Required Educational Technology Course
  Jon M. Clausen
  TechTrends, 66(2), pp. 276--286, 2021
  DOI: 10.1007/s11528-021-00673-x
• Open-Source Scholarship at Teaching-Oriented Institutions
  Joseph Kendall-Morwick
  J. Comput. Sci. Coll., 36(6), pp. 37--44, 2021
• BD2K Training Coordinating Center's ERuDIte: The Educational Resource Discovery Index for Data Science
  José Luis Ambite, Lily Fierro, Jonathan Gordon, Gully A. P. C. Burns, Florian Geigl, Kristina Lerman, John D. Van Horn
  IEEE Transactions on Emerging Topics in Computing, 9(1), pp. 316--328, 2021
  DOI: 10.1109/tetc.2019.2903466
• Bringing Green Software to Computer Science Curriculum: Perspectives from Researchers and Educators
  João Saraiva, Ziliang Zong, Rui Pereira
  Proceedings of the 26^th ACM Conference on Innovation and Technology in Computer Science Education, 1, pp. 498--504, 2021
  DOI: 10.1145/3430665.3456386
• Aquarium: open-source laboratory software for design, execution and data management
  Justin Vrana, Orlando de Lange, Yaoyu Yang, Garrett Newman, Ayesha Saleem, Abraham Miller, Cameron Cordray, Samer Halabiya, Michelle Parks, Eriberto Lopez, Sarah Goldberg, Benjamin Keller, Devin Strickland, Eric Klavins
  Synthetic Biology, 6(1), 2021
  DOI: 10.1093/synbio/ysab006
• Best practices review of five recommendations for FAIR software
  Jyl Boline, Samir Das, Ibrahima Faye, Wojtek Goscinski, Jeanette Hellgren-Kotaleski, Ramona Hicks, David Kennedy, Trygve Leergaard, Maryann Martone, Roman Mouček, Sharmila Venugopal, Thomas Wachtler, Mathew Abrams
  2021
  DOI: 10.7490/F1000RESEARCH.1118518.1
• What Does the Post-Moore Era Mean for Research Software Engineering?
  Kazutomo Yoshii
  2021
• Expanding Impact Metrics Contexts With Software Citation
  Keith E. Maull, Matt Mayernik
  , pp. 23--23, 2021
• Toward Reusable Science with Readable Code and Reproducibility
  Layan Bahaidarah, Ethan Hung, Andreas F. De Melo Oliveira, Jyotsna Penumaka, Lukas Rosario, Ana Trisovic
  2021
• CSCCE Community Profile: The FAIR for Research Software (FAIR4RS) Working Group
  Lou Woodley, Katie Pratt, Sara Kobilka, Paula Andrea Martinez
  2021
  DOI: 10.5281/ZENODO.5019939
• Green Algorithms: Quantifying the Carbon Footprint of Computation
  Loïc Lannelongue, Jason Grealey, Michael Inouye
  Advanced Science, 8(12), pp. 2100707, 2021
  DOI: 10.1002/advs.202100707
• A Curated Inventory of Programming Language Misconceptions
  Luca Chiodini, Igor Moreno Santos, Andrea Gallidabino, Anya Tafliovich, André L. Santos, Matthias Hauswirth
  Proceedings of the 26^th ACM Conference on Innovation and Technology in Computer Science Education, 1, pp. 380--386, 2021
  DOI: 10.1145/3430665.3456343
• How Gamification Affects Software Developers: Cautionary Evidence from a Natural Experiment on GitHub
  Lukas Moldon, Markus Strohmaier, Johannes Wachs
  Proceedings of the 2021 IEEE/ACM 43^rd International Conference on Software Engineering (ICSE), 2021
  DOI: 10.1109/icse43902.2021.00058
• Gütekriterien und Handlungsempfehlungen für die Entwicklung von Forschungssoftware in der Kommunikations- und Medienwissenschaft
  Mario Haim
  Medien & Kommunikationswissenschaft, 69(1), pp. 65--79, 2021
  DOI: 10.5771/1615-634x-2021-1-65
• The PerMedCoE competency framework to guide the training programme
  Marta Lloret-Llinares, Joaquim Calbó, Jose Carbonell-Caballero, Javier Conejero, Esther Dorado-Ladera, Damjana Kastelic, Vera Matser, Ana María Morales, Henrik Nortamo, Daniel Thomas-Lopez, Miguel Vazquez, Alessandra Villa
  2021
  https://permedcoe.eu/publication/the-permedcoe-competency-framework-to-guide-the-training-programme/
• Implementing Version Control With Git and GitHub as a Learning Objective in Statistics and Data Science Courses
  Matthew D. Beckman, Mine Çetinkaya-Rundel, Nicholas J. Horton, Colin W. Rundel, Adam J. Sullivan, Maria Tackett
  Journal of Statistics and Data Science Education, 29(sup1), pp. S132--S144, 2021
  DOI: 10.1080/10691898.2020.1848485
• TU Delft Guidelines on Research Software: Licensing, Registration and Commercialisation
  Merlijn Bazuine
  2021
  DOI: 10.5281/ZENODO.4629635
• Realization of best practices in software engineering and scientific writing through ready-to-use project skeletons
  Michael Haider, Michael Riesch, Christian Jirauschek
  Optical and Quantum Electronics, 53(10), 2021
  DOI: 10.1007/s11082-021-03192-4
• Fostering High School Girls' Interest and Attainment in Computer Science
  Mirela Gutica
  Proceedings of the 26^th ACM Conference on Innovation and Technology in Computer Science Education, 1, pp. 471--477, 2021
  DOI: 10.1145/3430665.3456353
• Defining Research Software: a controversial discussion
  Morane Gruenpeter, Daniel S. Katz, Anna-Lena Lamprecht, Tom Honeyman, Daniel Garijo, Alexander Struck, Anna Niehues, Paula Andrea Martinez, Leyla Jael Castro, Tovo Rabemanantsoa, Neil P. Chue Hong, Carlos Martinez-Ortiz, Laurents Sesink, Matthias Liffers, Anne Claire Fouilloux, Chris Erdmann, Silvio Peroni, Paula Martinez Lavanchy, Ilian Todorov, Manodeep Sinha
  2021
  DOI: 10.5281/ZENODO.5504015
• Developers Perception of Peer Code Review in Research Software Development
  Nasir U. Eisty, Jeffrey C. Carver
  Empirical Software Engineering, 27(1), 2022, 2021
  DOI: 10.1007/s10664-021-10053-x
• Understanding Equity, Diversity and Inclusion Challenges Within the Research Software Community
  Neil P. Chue Hong, Jeremy Cohen, Caroline Jay
  2021
  DOI: 10.48550/ARXIV.2104.01712
• FAIR Principles for Research Software (FAIR4RS Principles)
  Neil P. Chue Hong, Daniel S. Katz, Michelle Barker, Anna-Lena Lamprecht, Carlos Martinez, Fotis E. Psomopoulos, Jen Harrow, Leyla Jael Castro, Morane Gruenpeter, Paula Andrea Martinez, Tom Honeyman
  2021
  DOI: 10.15497/RDA00068
• Lessons learned in quality management for online research software tools in linguistics
  Nils Diewald, Eliza Margaretha, Marc Kupietz
  2021
  DOI: 10.14618/IDS-PUB-10469
• Research Software Engineering und Forschungsdatenmanagement - eine himmlische Kombination
  Oliver Bertuch
  2021
  DOI: 10.5446/55276
• Exchanging Best Practices and Tools for Supporting Computational and Data-Intensive Research, The Xpert Network
  Parinaz Barakhshan, Rudolf Eigenmann
  2021
• Advancing the Workforce That Supports Computationally and Data Intensive Research
  Patrick Schmitz, Scott Yockel, Claire Mizumoto, Thomas Cheatham, Dana Brunson
  Computing in Science & Engineering, 23(5), pp. 19--27, 2021
  DOI: 10.1109/mcse.2021.3098421
• Six Years of Shiny in Research – Collaborative Development of Web Tools in R
  Peter Kasprzak, Lachlan Mitchell, Olena Kravchuk, Andy Timmins
  2021
• Design Bioinformatics Curriculum Guidelines: Perspectives
  Qanita Bani Baker, Maryam S. Nuser
  Your Passport to a Career in Bioinformatics, pp. 91--102, 2021
  DOI: 10.1007/978-981-15-9544-8_10
• We need to talk about the lack of investment in digital research infrastructure
  Rebecca Knowles, Bilal A. Mateen, Yo Yehudi
  , 1(3), pp. 169--171--169--171, 2021
  DOI: 10.1038/s43588-021-00048-5
• An Exploration of the Mentorship Needs of Research Software Engineers
  Reed Milewicz, Miranda Mundt
  2021
• Checkliste zur Unterstützung der Helmholtz-Zentren bei der Implementierung von Richtlinien für nachhaltige Forschungssoftware
  Reinhard Messerschmidt, Heinz Pampel, Felix Bach, Wolfgang zu Castell, Michael Denker, Ants Finke, Bernadette Fritzsch, Martin Hammitzsch, Uwe Konrad, Yvonne Leifels, Christoph Möhl, Marco Nolden, Markus Scheinert, Tobias Schlauch, Thomas Schnicke, Dirk Steglich
  2021
  DOI: 10.48440/OS.HELMHOLTZ.031
• Best Practices in Statistical Computing
  Ricardo Sanchez, Beth Ann Griffin, Joseph Pane, Daniel McCaffrey
  2021
• A Community Perspective on Research Software in the Hydrological Sciences
  Robert Reinecke, Tim Trautmann, Thorsten Wagener, Katja Schüler
  2021
  DOI: 10.5194/egusphere-egu21-801
• Humanities Scholars and Digital Humanities Projects: Practice Barriers in Tools Usage
  Rui Liu, Dana McKay, George Buchanan
  Linking Theory and Practice of Digital Libraries, pp. 215--226--215--226, 2021
  DOI: 10.1007/978-3-030-86324-1_25
• Ranking programming languages by energy efficiency
  Rui Pereira, Marco Couto, Francisco Ribeiro, Rui Rua, Jácome Cunha, João Paulo Fernandes, João Saraiva
  Science of Computer Programming, 205, pp. 102609, 2021
  DOI: 10.1016/j.scico.2021.102609
• Open Source Community Health: Analytical Metrics and Their Corresponding Narratives
  Sean Goggins, Kevin Lumbard, Matt Germonprez
  Proceedings of the 2021 IEEE/ACM 4^th International Workshop on Software Health in Projects, Ecosystems and Communities (SoHeal), pp. 25--33, 2021
  DOI: 10.1109/soheal52568.2021.00010
• Making Open Source Project Health Transparent
  Sean P. Goggins, Matt Germonprez, Kevin Lumbard
  Computer, 54(8), pp. 104--111, 2021
  DOI: 10.1109/mc.2021.3084015
• The Rise of a New Digital Third Space Professional in Higher Education: Recognising Research Software Engineering
  Shoaib Sufi
  2021
• An Appraisal of Skill Gaps in Bioinformatics Education
  Smriti Sharma, Vinayak Bhatia
  Current Bioinformatics, 16(9), pp. 1117--1125, 2021
  DOI: 10.2174/1574893616666210609094743
• On the Impact of Management and Process on Academic Research Software
  Sorrel Harriet, Derek Groen, Stephen Crouch
  2021
• Raising the Bar: Assurance Cases for Scientific Software
  Spencer Smith, Mojdeh Sayari Nejad, Alan Wassyng
  Computing in Science & Engineering, 23(1), pp. 47--57, 2021
  DOI: 10.1109/mcse.2020.3019770
• Research Software Sustainability and Citation
  Stephan Druskat, Daniel S. Katz, Ilian T. Todorov
  2021
  DOI: 10.1109/BoKSS52540.2021.00008
• Open comments on the Task Force SIRS report: Scholarly Infrastructures for Research Software (EOSC Executive Board, EOSCArchitecture)
  Teresa Gomez-Diaz, Tomas Recio
  Research Ideas and Outcomes, 7, pp. e63872--e63872, 2021
• Exploring pharmacy students' interest in digital badges
  Therese I. Poirier, Logan Weis
  Currents in Pharmacy Teaching and Learning, 13(5), pp. 506--511, 2021
  DOI: 10.1016/j.cptl.2021.01.004
• Research Data Management and Data Stewardship Competences in University Curriculum
  Yuri Demchenko, Lennart Stoy
  Proceedings of the 2001 IEEE Global Engineering Education Conference (EDUCON), 2021
  DOI: 10.1109/educon46332.2021.9453956

2020

• Best ways to let others know how to cite your research software
  A. Allen, R. Nemiroff, P. Ryan, J. Schmidt, P. Teuben
  , pp. 10912--10912, 2020
• Understanding the landscape of scientific software used on high-performance computing platforms
  A. Grannan, K. Sood, B. Norris, A. Dubey
  The International Journal of High Performance Computing Applications, pp. 109434201989945--109434201989945, 2020
  DOI: 10/ggnd4b
• The ENVRI Reference Model
  Abraham Nieva de la Hidalga, Alex Hardisty, Paul Martin, Barbara Magagna, Zhiming Zhao
  Towards Interoperable Research Infrastructures for Environmental and Earth Sciences, pp. 61--81, 2020
  DOI: 10.1007/978-3-030-52829-4_4
• Nine Best Practices for Research Software Registries and Repositories: A Concise Guide
  Alain Monteil, Alejandra Gonzalez-Beltran, Alexandros Ioannidis, Alice Allen, Allen Lee, Anita Bandrowski, Bruce E. Wilson, Bryce Mecum, Cai Fan Du, Carly Robinson, Daniel Garijo, Daniel S. Katz, David Long, Genevieve Milliken, Hervé Ménager, Jessica Hausman, Jurriaan H. Spaaks, Katrina Fenlon, Kristin Vanderbilt, Lorraine Hwang, Lynn Davis, Martin Fenner, Michael R. Crusoe, Michael Hucka, Mingfang Wu, Neil Chue Hong, Peter Teuben, Shelley Stall, Stephan Druskat, Ted Carnevale, Thomas Morrell
  2020
  DOI: https://doi.org/10.48550/arXiv.2012.13117
• Core competencies for clinical informaticians: A systematic review
  Alan Davies, Julia Mueller, Georgina Moulton
  International Journal of Medical Informatics, 141, pp. 104237, 2020
  DOI: 10.1016/j.ijmedinf.2020.104237
• Expanding user communities with HPC Carpentry
  Alan O'Cais, Peter Steinbach
  The Journal of Computational Science Education, 11(1), pp. 21--25, 2020
  DOI: 10.22369/issn.2153-4136/11/1/4
• Curation as ``Interoperability With the Future'': Preserving Scholarly Research Software in Academic Libraries
  Alexandra Chassanoff, Micah Altman
  Journal of the Association for Information Science and Technology, 71(3), pp. 325--337, 2020
  DOI: 10.1002/asi.24244
• Biocuration - mapping resources and needs [version 2; peer review: 2 approved]
  Alexandra Holinski, Melissa L. Burke, Sarah L. Morgan, Peter McQuilton, Patricia M. Palagi
  F1000Research, 9, pp. 1094, 2020
  DOI: 10.12688/f1000research.25413.2
• Making organizational software easier to find in ASCL and ADS
  Alice Allen, Siddha Mavuram, Robert J. Nemiroff, Judy Schmidt, Peter Teuben
  2020
  DOI: https://doi.org/10.48550/arXiv.2012.12526
• Emulation Encounters: Software Preservation in Libraries, Archives, and Museums
  Amelia Acker
  2020
• Incorporating sustainability into software projects: a conceptual framework
  Amin Khalifeh, Peter Farrell, Mohammad Alrousan, Shaima Alwardat, Masar Faisal
  International Journal of Managing Projects in Business, 13(6), pp. 1339--1361--1339--1361, 2020
  DOI: 10.1108/ijmpb-12-2019-0289
• Bioinformatics-Based Activities in High School: Fostering Students' Literacy, Interest, and Attitudes on Gene Regulation, Genomics, and Evolution
  Ana Martins, Maria João Fonseca, Marina Lemos, Leonor Lencastre, Fernando Tavares
  Frontiers in Microbiology, 11, 2020
  DOI: 10.3389/fmicb.2020.578099
• CLIFF, a bioinformatics software tool to explore molecular differences between two sets of cancer cell lines
  Andreas Wernitznig, Jesse J. Lipp, Thomas Zichner, Daniel Gerlach, Markus J. Bauer, Tilman Voss, Andreas Schlattl, Christian Haslinger, Philip G. Montgomery, Mahdi Zamanighomi, William R. Sellers, Norbert Kraut
  2020
  DOI: 10.1158/1538-7445.am2020-3227
• Community expectations for research artifacts and evaluation processes
  Ben Hermann, Stefan Winter, Janet Siegmund
  , pp. 469--480--469--480, 2020
• Making a Research Infrastructure: Conditions and Strategies to Transform a Service into an Infrastructure
  Benedikt Fecher, Nataliia Sokolovska, Teresa Völker, Philip Nebe, Rebecca Kahn
  Journal of the Association for Information Science and Technology (JASIST), 2020
• Umgang mit Forschungssoftware an der Universität Stuttgart
  Bernd Flemisch, Sibylle Hermann, Christian Holm, Miriam Mehl, Guido Reina, Benjamin Uekermann, David Boehringer, Thomas Ertl, Jean-Noël Grad, Dorothea Iglezakis, others
  2020
• Umgang mit Forschungssoftware an der Universität Stuttgart
  Bernd Flemisch, Sibylle Hermann, Christian Holm, Miriam Mehl, Guido Reina, Benjamin Uekermann, David Boehringer, Thomas Ertl, Jean-Noël Grad, Dorothea Iglezakis, Alexander Jaust, Timo Koch, Anett Seeland, Rudolf Weeber, Florian Weik, Kilian Weishaupt
  2020
  DOI: 10.18419/OPUS-11178
• Evolution of Statistical Software and Quantitative Methods
  Brandon C. LeBeau, Ariel M. Aloe
  2020
  DOI: 10.17077/pp.005273
• Software must be recognised as an important output of scholarly research
  Caroline Jay, Robert Haines, Daniel S. Katz
  2020
• FAIR, FLOSS and Sustainable: Complementary Paradigms for Research Software
  Christian E. Busse
  2020
  DOI: 10.5281/ZENODO.3947104
• The Collaborative Modularization and Reengineering Approach CORAL for Open Source Research Software
  Christian Zirkelbach, Alexander Krause, Wilhelm Hasselbring
  International Journal On Advances in Software, 13(1&2), pp. 34--49--34--49, 2020
• On the Usage of Badges in Open Source Packages on GitHub
  Damien Legay, Alexandre Decan, Tom Mens
  Proceedings of the 18^th Edition of the Belgian-Netherlands Software Evolution Symposium (BENEVOL 2019), 2020
  https://ceur-ws.org/Vol-2605/9.pdf
• Towards Knowledge Graphs of Research Software metadata
  Daniel Garijo, Yolanda Gil, Maximiliano Osorio, Varun Ratnakar, Deborah Khider
  2020
  DOI: 10.5281/ZENODO.3977916
• Open Science in Software Engineering
  Daniel Mendez, Daniel Graziotin, Stefan Wagner, Heidi Seibold
  Contemporary Empirical Methods in Software Engineering, pp. 477--501--477--501, 2020
  DOI: 10.1007/978-3-030-32489-6_17
• Ten Simple Rules for Writing Dockerfiles for Reproducible Data Science
  Daniel Nüst, Vanessa Sochat, Ben Marwick, Stephen Eglen, Tim Head, Tony Hirst, Benjamin Evans
  2020
  DOI: 10.31219/osf.io/fsd7t
• Software and Data Citation
  Daniel S. Katz, Neil P. Chue Hong, Tim Clark, Martin Fenner, Maryann E. Martone
  Computing in Science & Engineering, 22(2), pp. 4--7--4--7, 2020
  DOI: 10/ggzwsj
• Connecting Workplace Learning and Academic Credentials via Digital Badges
  David Leaser, Kemi Jona, Sean Gallagher
  New Directions for Community Colleges, 2020(189), pp. 39--51, 2020
  DOI: 10.1002/cc.20396
• Software engineering practices for scientific software development: A systematic mapping study
  Elvira-Maria Arvanitou, Apostolos Ampatzoglou, Alexander Chatzigeorgiou, Jeffrey C. Carver
  Journal of Systems and Software, pp. 110848--110848, 2020
• A Figure One Web Tool for Visualization of Experimental Designs
  Foo Cheung
  Journal of Open Research Software, 8, 2020
  DOI: 10/ggzwsf
• ESiWACE2 Services: RSE collaborations in Weather and Climate
  Gijs van den Oord, Victor Azizi, Alessio Sclocco, Georges-Emmanuel Moulard, David Guibert, Jisk Attema, Erwan Raffin, Ben van Werkhoven
  2020
• Methods for training collaborative biostatisticians
  Gina-Maria Pomann, L. Ebony Boulware, Shari Messinger Cayetano, Manisha Desai, Felicity T. Enders, John A. Gallis, Jonathan Gelfond, Steven C. Grambow, Alexandra L. Hanlon, Angelean Hendrix, Pandurang Kulkarni, Jodi Lapidus, Hui-Jie Lee, Jonathan D. Mahnken, Julie P. McKeel, Rebecca Moen, Robert A. Oster, Sarah Peskoe, Greg Samsa, Thomas G. Stewart, Tracy Truong, Lisa Wruck, Samantha M. Thomas
  Journal of Clinical and Translational Science, 5(1), pp. e26, 2020
  DOI: 10.1017/cts.2020.518
• An Environment for Sustainable Research Software in Germany and Beyond: Current State, Open Challenges, and Call for Action
  Hartwig Anzt, Felix Bach, Stephan Druskat, Frank Löffler, Axel Loewe, Bernhard Y. Renard, Gunnar Seemann, Alexander Struck, Elke Achhammer, Piush Aggarwal, Franziska Appel, Michael Bader, Lutz Brusch, Christian Busse, Gerasimos Chourdakis, Piotr W. Dabrowski, Peter Ebert, Bernd Flemisch, Sven Friedl, Bernadette Fritzsch, Maximilian D. Funk, Volker Gast, Florian Goth, Jean-Noël Grad, Sibylle Hermann, Florian Hohmann, Stephan Janosch, Dominik Kutra, Jan Linxweiler, Thilo Muth, Wolfgang Peters-Kottig, Fabian Rack, Fabian H. C. Raters, Stephan Rave, Guido Reina, Malte Reißig, Timo Ropinski, Joerg Schaarschmidt, Heidi Seibold, Jan P. Thiele, Benjamin Uekerman, Stefan Unger, Rudolf Weeber
  F1000Research 2020, 2020
  DOI: 10/ggx4z2
• Recommendations for Services in a FAIR Data Ecosystem
  Hylke Koers, Daniel Bangert, Emilie Hermans, René van Horik, Maaike de Jong, Mustapha Mokrane
  Patterns, 1(5), pp. 100058, 2020
  DOI: 10.1016/j.patter.2020.100058
• Assessment report on 'FAIRness of services'
  Hylke Koers, Morane Gruenpeter, Patricia Herterich, Rob Hooft, Sarah Jones, Jessica Parland-von Essen, Christine Staiger
  2020
  DOI: 10.5281/ZENODO.3688762
• A Software Institute for Data-Intensive Sciences, Joining Computer Science Academia and Natural Science Research
  Ian Bird, Simone Campana, Pere Mato Vila, Stefan Roiser, Markus Schulz, Graeme A. Stewart, Andrea Valassi
  , 245, pp. 08020--08020, 2020
• Principios de diseño de insignias digitales en programas de educación continua profesional: una revisión exploratoria
  Ismael Canales-Negrón
  Revista Digital de Investigación en Docencia Universitaria, 14(2), pp. e1170, 2020
  DOI: 10.19083/ridu.2020.1170
• Data Without Software Are Just Numbers
  James Harold Davenport, James Grant, Catherine Mary Jones
  Data Science Journal, 19, 2020
  DOI: 10/ggzwsh
• Increasing the quality of (academic) scientific software
  Jan-Patrick Lehra, Tomislav Maricb, Dieter Botheb, Christian Bischofa
  2020
• FAIR digital objects in environmental and life sciences should comprise workflow operation design data and method information for repeatability of study setups and reproducibility of results
  Janno Harjes, Anton Link, Tanja Weibulat, Dagmar Triebel, Gerhard Rambold
  Database, 2020, 2020
  DOI: 10.1093/database/baaa059
• Recommendations to enhance rigor and reproducibility in biomedical research
  Jaqueline J. Brito, Jun Li, Jason H. Moore, Casey S. Greene, Nicole A. Nogoy, Lana X. Garmire, Serghei Mangul
  GigaScience, 9(6), 2020
  DOI: 10.1093/gigascience/giaa056
• Domain-Based Ranking of Software Test--Effort Estimation Techniques for Academic Projects
  Jatinderkumar R. Saini, Vikas S. Chomal
  Advances in Intelligent Systems and Computing, pp. 53--69--53--69, 2020
  DOI: 10.1007/978-981-15-0936-0_5
• RSEs in Research? RSEs in IT?: Finding a suitable home for RSEs
  Jeremy Cohen, Mark Woodbridge
  2020
• The role of metadata in reproducible computational research
  Jeremy Leipzig, Daniel Nüst, Charles Tapley Hoyt, Stian Soiland-Reyes, Karthik Ram, Jane Greenberg
  2020
• Free and Low-Cost Twitter Research Software Tools for Social Science
  Jingyuan Yu, Juan Muñoz-Justicia
  Social Science Computer Review, pp. 089443932090431--089443932090431, 2020
  DOI: 10/ggkx4f
• Ten simple rules for writing a paper about scientific software
  Joseph D. Romano, Jason H. Moore
  PLOS Computational Biology, 16(11), pp. e1008390--e1008390, 2020
  DOI: 10.1371/journal.pcbi.1008390
• D3.3 Policy Enhancement Recommendations
  Joy Davidson, Marjan Grootveld, Angus Whyte, Patricia Herterich, Claudia Engelhardt, Lennart Stoy, Vanessa Proudman
  2020
  DOI: 10.5281/zenodo.3686901
• Better together: Elements of successful scientific software development in a distributed collaborative community
  Julia Koehler Leman, Brian D. Weitzner, P. Douglas Renfrew, Steven M. Lewis, Rocco Moretti, Andrew M. Watkins, Vikram Khipple Mulligan, Sergey Lyskov, Jared Adolf-Bryfogle, Jason W. Labonte, Justyna Krys, RosettaCommons Consortium, Christopher Bystroff, William Schief, Dominik Gront, Ora Schueler-Furman, David Baker, Philip Bradley, Roland Dunbrack, Tanja Kortemme, Andrew Leaver-Fay, Charlie E. M. Strauss, Jens Meiler, Brian Kuhlman, Jeffrey J. Gray, Richard Bonneau
  PLOS Computational Biology, 16(5), pp. e1007507, 2020
  DOI: 10.1371/journal.pcbi.1007507
• Contributing HPC Skills to the HPC Certification Forum
  Julian Kunkel, Kai Himstedt, Weronika Filinger, Jean-Thomas Acquaviva, Anja Gerbes, Lev Lafayette
  The Journal of Computational Science Education, 11(1), pp. 106--107, 2020
  DOI: 10.22369/issn.2153-4136/11/1/17
• The HPC Certification Forum: Toward a Globally Acknowledged HPC Certification
  Julian Kunkel, Weronika Filinger, Christian Meesters, Anja Gerbes
  Computing in Science & Engineering, 22(4), pp. 110--114, 2020
  DOI: 10.1109/MCSE.2020.2996073
• One Year HPC Certification Forum in Retrospective
  Julian Martin Kunkel, Kai Himstedt, Weronika Filinger, Jean-Thomas Acquaviva, Anja Gerbes, Lev Lafayette
  The Journal of Computational Science Education, 11(1), pp. 29--35, 2020
  DOI: 10.22369/issn.2153-4136/11/1/6
• Short communication: Landlab v2.0: A software package for Earth surface dynamics
  Katherine R. Barnhart, Eric W. H. Hutton, Gregory E. Tucker, Nicole M. Gasparini, Erkan Istanbulluoglu, Daniel E. J. Hobley, Nathan J. Lyons, Margaux Mouchene, Sai Siddhartha Nudurupati, Jordan M. Adams, Christina Bandaragoda
  2020
  DOI: 10.5194/esurf-2020-12
• Doing Data Science on the Shoulders of Giants: The Value of Open Source Software for the Data Science Community
  Katie Malone, Rich Wolski
  Harvard Data Science Review, 2020
  https://hdsr.mitpress.mit.edu/pub/xsrt4zs2/release/2
• (Deep) FAIR mathematics
  Katja Berčič, Michael Kohlhase, Florian Rabe
  it - Information Technology, 62(1), pp. 7--17, 2020
  DOI: 10.1515/itit-2019-0028
• A framework to assess the quality and impact of bioinformatics training across ELIXIR
  Kim T. Gurwitz, Prakash Singh Gaur, Louisa J. Bellis, Lee Larcombe, Eva Alloza, Balint Laszlo Balint, Alexander Botzki, Jure Dimec, Victoria Dominguez del Angel, Pedro L. Fernandes, Eija Korpelainen, Roland Krause, Mateusz Kuzak, Loredana Le Pera, Brane Leskošek, Jessica M. Lindvall, Diana Marek, Paula A. Martinez, Tuur Muyldermans, Ståle Nygård, Patricia M. Palagi, Hedi Peterson, Fotis Psomopoulos, Vojtech Spiwok, Celia W. G. van Gelder, Allegra Via, Marko Vidak, Daniel Wibberg, Sarah L. Morgan, Gabriella Rustici
  PLOS Computational Biology, 16(7), pp. e1007976, 2020
  DOI: 10.1371/journal.pcbi.1007976
• The case for free and open source software in research and scholarship
  Laura Fortunato, Mark Galassi
  2020
  DOI: 10.31235/osf.io/ye7sx
• Barking up the same tree? Lessons from workplace-based assessment and digital badges
  Leslie Martin, Matthew Sibbald
  Medical Education, 54(7), pp. 593--595, 2020
  DOI: 10.1111/medu.14178
• Ten simple rules for making training materials FAIR
  Leyla Garcia, Bérénice Batut, Melissa L. Burke, Mateusz Kuzak, Fotis Psomopoulos, Ricardo Arcila, Teresa K. Attwood, Niall Beard, Denise Carvalho-Silva, Alexandros C. Dimopoulos, Victoria Dominguez del Angel, Michel Dumontier, Kim T. Gurwitz, Roland Krause, Peter McQuilton, Loredana Le Pera, Sarah L. Morgan, Päivi Rauste, Allegra Via, Pascal Kahlem, Gabriella Rustici, Celia W.G. van Gelder, Patricia M. Palagi
  PLOS Computational Biology, 16(5), pp. e1007854, 2020
  DOI: 10.1371/journal.pcbi.1007854
• Software as a first-class citizen in research
  Leyla Jael Garcia Castro, Michelle Barker, Neil P. Chue Hong, Fotis Psomopoulos, Jennifer Harrow, Daniel S. Katz, Mateusz Kuzak, Paula Andrea Martinez, Allegra Via
  2020
• The varying openness of digital open science tools
  Louise Bezuidenhout, Johanna Havemann
  F1000Research, 9, pp. 1292--1292, 2020
  DOI: 10.12688/f1000research.26615.1
• Analysis and Categorisation of Research Software in the Digital Humanities
  Lukas Harzenetter, Johanna Barzen Uwe Breitenbücher, Frank Leymann, Brigitte Mathiak, Philip Schildkamp, Claes Neuefeind
  2020
• The place of models and modelling in Digital Humanities: Intersections with a Research Software Engineering perspective
  Maher Brian, Arianna Ciula, Noël Geoffroy, Ferraro Ginestra, Vieira Miguel, Caton Paul
  2020
  DOI: 10.17613/789Z-9P59
• Does stress impact technical interview performance?
  Mahnaz Behroozi, Shivani Shirolkar, Titus Barik, Chris Parnin
  Proceedings of the 28^th ACM joint meeting on European Software Engineering Conference and symposium on the Foundations of Software Engineering (ESEC/FSE 2020), pp. 481--492, 2020
  DOI: 10.1145/3368089.3409712
• Leipzig-Berlin-Erklärung zu NFDI-Querschnittsthemen der Infrastrukturentwicklung
  Maik Bierwirth, Frank Oliver Glöckner, Christian Grimm, Sonja Schimmler, Franziska Boehm, Christian Busse, Andreas Degkwitz, Oliver Koepler, Heike Neuroth
  2020
  DOI: 10.5281/ZENODO.3895209
• On Energy Debt: Managing Consumption on Evolving Software
  Marco Couto, Daniel Maia, João Saraiva, Rui Pereira
  Proceedings of the 3^rd International Conference on Technical Debt, pp. 62--66, 2020
  DOI: 10.1145/3387906.3388628
• Publishing computational research. A review of infrastructures for reproducible and transparent scholarly communication
  Markus Konkol, Daniel Nüst, Laura Goulier
  2020
• Enabling Synergy: Improving the Information Infrastructure for Planetary Science
  Michael J. Kurtz, Alberto Accomazzi, Edwin A. Henneken
  2020
• How Research Software Engineers Can Support Scientific Software
  Miranda Mundt, Evan Harvey
  2020
• EVER-EST: The Platform Allowing Scientists to Cross-Fertilize and Cross-Validate Data
  Mirko Albani, Rosemarie Leone, Federica Foglini, Francesco De Leo, Fulvio Marelli, Iolanda Maggio
  Data Science Journal, 19, pp. 21, 2020
  DOI: 10.5334/dsj-2020-021
• A Survey of Computational Tools in Solar Physics
  Monica G. Bobra, Stuart J. Mumford, Russell J. Hewett, Steven D. Christe, Kevin Reardon, Sabrina Savage, Jack Ireland, Tiago M. D. Pereira, Bin Chen, David Pérez-Suárez
  Solar Physics, 295(4), pp. 57--57, 2020
  DOI: 10.1007/s11207-020-01622-2
• M2.15 Assessment report on 'FAIRness of software'
  Morane Gruenpeter, Roberto Di Cosmo, Hylke Koers, Patricia Herterich, Rob Hooft, Jessica Parland-von Essen, Jonas Tana, Tero Aalto, Sarah Jones
  2020
  DOI: 10.5281/zenodo.4095092
• Testing Research Software: A Case Study
  Nasir U. Eisty, Danny Perez, Jeffrey C. Carver, J. David Moulton, Hai Ah Nam
  Lecture Notes in Computer Science, pp. 457--463--457--463, 2020
  DOI: 10.1007/978-3-030-50436-6_33
• Implementing FAIR Data Infrastructures (Dagstuhl Perspectives Workshop 18472)
  Natalia Manola, Peter Mutschke, Guido Scherp, Klaus Tochtermann, Peter Wittenburg, Kathleen Gregory, Wilhelm Hasselbring, Kees den Heijer, Paolo Manghi, Dieter Van Uytvanck
  2020
  DOI: 10.4230/DAGMAN.8.1.1
• TeSS: a platform for discovering life-science training opportunities
  Niall Beard, Finn Bacall, Aleksandra Nenadic, Milo Thurston, Carole A. Goble, Susanna-Assunta Sansone, Teresa K. Attwood
  Bioinformatics, 36(10), pp. 3290--3291, 2020
  DOI: 10.1093/bioinformatics/btaa047
• Finite and infinite games: An ethnography of institutional logics in research software sustainability
  Nicholas Weber
  Proceedings of the Association for Information Science and Technology, 57(1), 2020
  DOI: 10.1002/pra2.281
• A graduate student perspective on overcoming barriers to interacting with open-source software
  Oihane Cereceda, Danielle E. A. Quinn
  FACETS, 5(1), pp. 289--303, 2020
  DOI: 10.1139/facets-2019-0020
• State of FAIRness in ESFRI Projects
  Peter Wittenburg, Franciska de Jong, Dieter van Uytvanck, Massimo Cocco, Keith Jeffery, Michael Lautenschlager, Hannes Thiemann, Margareta Hellström, Ari Asmi, Petr Holub
  Data Intelligence, 2(1-2), pp. 230--237, 2020
  DOI: 10.1162/dint_a_00045
• Attributing and Referencing (Research) Software: Best Practices and Outlook From Inria
  Pierre Alliez, Roberto Di Cosmo, Benjamin Guedj, Alain Girault, Mohand-Saïd Hacid, Arnaud Legrand, Nicolas Rougier
  Computing in Science Engineering, 22(1), pp. 39--52, 2020
  DOI: 10.1109/MCSE.2019.2949413
• Building a Scalable Infrastructure
  Ravi Tripathi, William Stonewall Monroe, Mike Hanby, John-Paul Robinson
  2020
  DOI: 10.1145/3311790.3399620
• Developing an Open Source Digital Scholarship Ecosystem
  Ray Uzwyshyn
  2020
• Open Source Digital Ecosystems for Accelerating Global Research, Innovation and Collaboration
  Raymond Uzwyshyn
  2020
• Towards Evidence-Based Practice in Scientific Software Develop-ment
  Reed Milewicz
  2020
• Research, Develop, Deploy: Building a Full Spectrum Software Engineering and Research Department
  Reed Milewicz, James Willenbring, Dena Vigil
  2020
• NFDI4Ing - the National Research Data Infrastructure for Engineering Sciences
  Robert H. Schmitt, Verena Anthofer, Sören Auer, Sait Başkaya, Christian Bischof, Torsten Bronger, Florian Claus, Florian Cordes, Évariste Demandt, Thomas Eifert, Bernd Flemisch, Matthias Fuchs, Marc Fuhrmans, Regine Gerike, Eva-Maria Gerstner, Vanessa Hanke, Ina Heine, Louis Huebser, Dorothea Iglezakis, Gerald Jagusch, Axel Klinger, Manfred Krafczyk, Angelina Kraft, Patrick Kuckertz, Ulrike Küsters, Roland Lachmayer, Christian Langenbach, Iryna Mozgova, Matthias S. Müller, Britta Nestler, Peter Pelz, Marius Politze, Nils Preuß, Marie-Dominique Przybylski-Freund, Nanette Rißler-Pipka, Martin Robinius, Joachim Schachtner, Hartmut Schlenz, Annett Schwarz, Jürgen Schwibs, Michael Selzer, Irina Sens, Thomas Stäcker, Christian Stemmer, Wolfgang Stille, Detlef Stolten, Rainer Stotzka, Achim Streit, Robert Strötgen, Wei Min Wang
  2020
  DOI: 10.5281/ZENODO.4015201
• Referencing Source Code Artifacts: A Separate Concern in Software Citation
  Roberto Di Cosmo, Morane Gruenpeter, Stefano Zacchiroli
  Computing in Science & Engineering, 22(2), pp. 33--43--33--43, 2020
  DOI: 10/ggzwsg
• Announcing biblatex-software
  Roberto Di Cosmo
  ACM SIGSOFT Software Engineering Notes, 45(4), pp. 22--23--22--23, 2020
  DOI: 10.1145/3417564.3417570
• BibL A TEX style extension for Software
  Roberto Di Cosmo
  2020
• Archiving and Referencing Source Code with Software Heritage
  Roberto Di Cosmo
  Mathematical Software – ICMS 2020, pp. 362--373--362--373, 2020
  DOI: 10.1007/978-3-030-52200-1_36
• Social Data: CESSDA Best Practices
  Ron Dekker
  Data Intelligence, 2(1-2), pp. 220--229, 2020
  DOI: 10.1162/dint_a_00044
• Perceived relevance of digital badges predicts longitudinal change in program engagement
  Ross Higashi, Christian D. Schunn
  Journal of Educational Psychology, 112(5), pp. 1020--1041, 2020
  DOI: 10.1037/edu0000401
• Discussion Towards a Library of Software Sustainability Requirements
  Rui Carvalho, A. Silva
  2020
• Software Engineering as Research Method: Aligning Roles in Econ-ARK
  Sebastian Benthall, Mridul Seth
  2020
• Design, delivery and evaluation of a bioinformatics education workshop for 13-16-year-olds
  Stevie A. Bain, Thomas R. Meagher, Daniel Barker
  Journal of Biological Education, 56(5), pp. 570--580, 2020
  DOI: 10.1080/00219266.2020.1858932
• Nine quick tips for efficient bioinformatics curriculum development and training
  Susan McClatchy, Kristin M. Bass, Daniel M. Gatti, Adam Moylan, Gary Churchill
  PLOS Computational Biology, 16(7), pp. e1008007, 2020
  DOI: 10.1371/journal.pcbi.1008007
• Software Analysis Method for Assessing Software Sustainability
  Theresia Ratih Dewi Saputri, Seok-Won Lee
  International Journal of Software Engineering and Knowledge Engineering, 30(01), pp. 67--95, 2020
  DOI: 10/ggnd4h
• Reproducibility and replication of experimental particle physics results
  Thomas Junk, Louis Lyons
  Harvard Data Science Review, 2(4), 2020
  DOI: 10.1162/99608f92.250f995b
• Digitale Dienste für die Wissenschaft - wohin geht die Reise?
  Uwe Konrad, Konrad Förstner, Johannes Reetz, Klaus Wannemacher, Jürgen Kett, Florian Mannseicher
  2020
  DOI: 10.5281/ZENODO.4301924
• Experience in engineering of scientific software: The case of an optimization software for oil pipelines
  Vahid Garousi, Ehsan Abbasi, Bedir Tekinerdogan
  2020
• The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2020 update
  Vahid Jalili, Enis Afgan, Qiang Gu, Dave Clements, Daniel Blankenberg, Jeremy Goecks, James Taylor, Anton Nekrutenko
  Nucleic Acids Research, 48(14), pp. 8205--8207, 2020
  DOI: 10.1093/nar/gkaa554
• The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2020 update
  Vahid Jalili, Enis Afgan, Qiang Gu, Dave Clements, Daniel Blankenberg, Jeremy Goecks, James Taylor, Anton Nekrutenko
  Nucleic Acids Research, 48(W1), pp. W395--W402, 2020
  DOI: 10.1093/nar/gkaa434
• Kieker: A monitoring framework for software engineering research
  Wilhelm Hasselbring, André van Hoorn
  Software Impacts, 5, pp. 100019--100019, 2020
  DOI: 10.1016/j.simpa.2020.100019
• Open Source Research Software
  Wilhelm Hasselbring, Leslie Carr, Simon Hettrick, Heather Packer, Thanassis Tiropanis
  Computer, 53(8), pp. 84--88--84--88, 2020
  DOI: 10.1109/mc.2020.2998235
• From FAIR research data toward FAIR and open research software
  Wilhelm Hasselbring, Leslie Carr, Simon Hettrick, Heather Packer, Thanassis Tiropanis
  it - Information Technology, 62(1), pp. 39--47, 2020
  DOI: 10.1515/itit-2019-0040
• The Use of Metadata in Open Educational Resources Repositories: An Exploratory Study
  William Simão de Deus, Ellen Francine Barbosa
  Proceedings of the 2020 IEEE 44^th Annual Computers, Software, and Applications Conference (COMPSAC), 2020
  DOI: 10.1109/compsac48688.2020.00025
• Vorlesung Digitale Nachhaltigkeit:Open Source Lizenzen
  Wolfgang Straub, Matthias Stürmer
  2020
• Reproducibility Starts from You Today
  Yasemin Turkyilmaz-van der Velden, Nicolas Dintzner, Marta Teperek
  Patterns, 1(6), pp. 100099--100099, 2020
  DOI: 10.1016/j.patter.2020.100099

2019

• Giving software its due
  
  Nature Methods, 16(3), pp. 207--207, 2019
  DOI: 10/gfv4pq
• Ten simple rules for writing and sharing computational analyses in Jupyter Notebooks
  Adam Rule, Amanda Birmingham, Cristal Zuniga, Ilkay Altintas, Shih-Cheng Huang, Rob Knight, Niema Moshiri, Mai H. Nguyen, Sara Brin Rosenthal, Fernando Pérez, Peter W. Rose
  PLOS Computational Biology, 15(7), pp. e1007007, 2019
  DOI: 10.1371/journal.pcbi.1007007
• Accredit scientific software for sustainability
  Alexander L. R. Lubbock
  Nature, 572(7771), pp. 586--586, 2019
  DOI: 10/ggcmcp
• Curation as Interoperability With the Future: Preserving Scholarly Research Software in Academic Libraries
  Alexandra Chassanoff, Micah Altman
  Journal of the Association for Information Science and Technology, 2019
  DOI: 10/gf5m4r
• Receiving Credit for Research Software
  Alice Allen
  , 523, pp. 593--593, 2019
  https://ui.adsabs.harvard.edu/abs/2019ASPC..523..593A
• Enabling FAIR research in Earth Science through research objects
  Andres Garcia-Silva, Jose Manuel Gomez-Perez, Raul Palma, Marcin Krystek, Simone Mantovani, Federica Foglini, Valentina Grande, Francesco De Leo, Stefano Salvi, Elisa Trasatti, Vito Romaniello, Mirko Albani, Cristiano Silvagni, Rosemarie Leone, Fulvio Marelli, Sergio Albani, Michele Lazzarini, Hazel J. Napier, Helen M. Glaves, Timothy Aldridge, Charles Meertens, Fran Boler, Henry W. Loescher, Christine Laney, Melissa A. Genazzio, Daniel Crawl, Ilkay Altintas
  Future Generation Computer Systems, 98, pp. 550--564, 2019
  DOI: 10.1016/j.future.2019.03.046
• D3.2 FAIR Data Practice Analysis
  Angus Whyte, Claudia Engelhart, Daniel Bangert, Gabin Kayumbi-Kabeya, Simon Lambert, Mark Thorley, Ryan O'Connor, Patricia Herterich, Joy Davidson
  2019
  DOI: 10.5281/zenodo.3581353
• How to support open-source software and stay sane
  Anna Nowogrodzki
  Nature, 571(7763), pp. 133--134, 2019
  DOI: 10.1038/d41586-019-02046-0
• Towards FAIR principles for research software
  Anna-Lena Lamprecht, Leyla Garcia, Mateusz Kuzak, Carlos Martinez, Ricardo Arcila, Eva Martin Del Pico, Victoria Dominguez Del Angel, Stephanie van de Sandt, Jon Ison, Paula Andrea Martinez, Peter McQuilton, Alfonso Valencia, Jennifer Harrow, Fotis Psomopoulos, Josep Ll Gelpi, Neil Chue Hong, Carole Goble, Salvador Capella-Gutierrez
  Data Science, Preprint(Preprint), pp. 1--23, 2019
  DOI: 10.3233/DS-190026
• Diversity and inclusion in digital scholarship and pedagogy: the case of The Programming Historian
  Anna-Maria Sichani, James Baker, Maria José Afanador-Llach, Brandon Walsh
  Insights: the UKSG journal, 32(1), pp. 16, 2019
  DOI: 10.1629/uksg.465
• From trainees to trainers to instructors: Sustainably building a national capacity in bioinformatics training
  Annette McGrath, Katherine Champ, Catherine A. Shang, Ellen van Dam, Cath Brooksbank, Sarah L. Morgan
  PLOS Computational Biology, 15(6), pp. e1006923, 2019
  DOI: 10.1371/journal.pcbi.1006923
• Software Sustainability: A Systematic Literature Review and Comprehensive Analysis
  Asif Imran, Tevfik Kosar
  2019
  http://arxiv.org/abs/1910.06109v1
• SuLMaSS - Sustainable Lifecycle Management for Scientific Software
  Axel Loewe, Gunnar Seemann, Eike Moritz Wülfers, Yung-Lin Huang, Jorge Sánchez, Felix Bach, Robert Ulrich, Michael Selzer
  2019
  DOI: 10/gf5tgs
• The FAIR Principles: First Generation Implementation Choices and Challenges
  Barend Mons, Erik Schultes, Fenghong Liu, Annika Jacobsen
  Data Intelligence, 2(1-2), pp. 1--9, 2019
  DOI: 10.1162/dint_e_00023
• Scholarly Makerspaces – Ein Zwischenbericht zum DFG-Projekt FuReSH
  Ben Kaden, Michael Kleineberg
  LIBREAS. Library Ideas, 2019
  DOI: 10/gf69ts
• Enabling coordinated, distributed development of scientific software: A research agenda for adapting a team of teams approach
  Benjamin Hayden Sims
  2019
• Software engineering for scientific big data analysis
  Björn A Grüning, Samuel Lampa, Marc Vaudel, Daniel Blankenberg
  GigaScience, 8(5), 2019
  DOI: 10.1093/gigascience/giz054
• Integrating Molecular Biology and Bioinformatics Education
  Boas Pucker, Hanna Marie Schilbert, Sina Franziska Schumacher
  Journal of Integrative Bioinformatics, 16(3), 2019
  DOI: 10.1515/jib-2019-0005
• Comparing badges and learning goals in low- and high-stakes learning contexts
  Bradley J. Morris, Colleen Dragovich, Rachael Todaro, Sebiha Balci, Eve Dalton
  Journal of Computing in Higher Education, 31(3), pp. 573--603, 2019
  DOI: 10.1007/s12528-019-09228-9
• FAIR Computational Workflows
  Carole Goble, Sarah Cohen-Boulakia, Stian Soiland-Reyes, Daniel Garijo, Yolanda Gil, Michael R. Crusoe, Kristian Peters, Daniel Schober
  Data Intelligence, 2(1-2), pp. 108--121, 2019
  DOI: 10.1162/dint_a_00033
• Theory-Software Translation: Research Challenges and Future Directions
  Caroline Jay, Robert Haines, Daniel S. Katz, Jeffrey Carver, James C. Phillips, Anshu Dubey, Sandra Gesing, Matthew Turk, Hui Wan, Hubertus van Dam, James Howison, Vitali Morozov, Steven R. Brandt
  2019
  http://arxiv.org/abs/1910.09902v1
• Open Source Tools and Methods
  Christophe Bernard
  eNeuro, 6(5), pp. ENEURO.0342--19.2019, 2019
  DOI: 10/ggcmcn
• Top 10 FAIR Data & Software Things
  Christopher Erdmann, Natasha Simons, Reid Otsuji, Stephanie Labou, Ryan Johnson, Guilherme Castelao, Bia Villas Boas, Anna-Lena Lamprecht, Carlos Martinez Ortiz, Leyla Garcia, Mateusz Kuzak, Paula Andrea Martinez, Liz Stokes, Tom Honeyman, Sharyn Wise, Josh Quan, Scott Peterson, Amy Neeser, Lena Karvovskaya, Otto Lange, Iza Witkowska, Jacques Flores, Fiona Bradley, Kristina Hettne, Peter Verhaar, Ben Companjen, Laurents Sesink, Fieke Schoots, Erik Schulte, Rajaram Kaliyaperumal, Erzsebet Toth-Czifra, Ricardo De Miranda Azevedo, Sanne Muurling, John Brown, Janice Chan, Niamh Quigley, Lisa Federer, Douglas Joubert, Allissa Dillman, Kenneth Wilkins, Ishwar Chandramouliswaran, Vivek Navale, Susan Wright, Silvia Di Giorgio, Akinyemi Mandela Fasemore, Konrad Förstner, Till Sauerwein, Eva Seidlmayer, Ilja Zeitlin, Susannah Bacon, Katie Hannan, Richard Ferrers, Keith Russell, Deidre Whitmore, Tim Dennis
  2019
  DOI: 10.5281/zenodo.2555498
• Towards Sustainable Software Engineering and Citable Software Publications at GEOMAR
  Claas Faber, Markus Scheinert, Barbara Schmidt
  2019
  DOI: 10/gf5m4s
• SSHOC D3.1 Report on SSHOC (meta)data interoperability problems
  Daan Broeder, Thorsten Trippel, Emiliano Degl'Innocenti, Roberta Giacomi, Maurizio Sanesi, Mari Kleemola, Katja Moilanen, Henri Ala-Lahti, Caspar Jordan, Iris Alfredsson, Hervé L'Hours, Matej Ďurčo
  2019
  DOI: 10.5281/ZENODO.3569867
• Ten simple rules for helping newcomers become contributors to open projects
  Dan Sholler, Igor Steinmacher, Denae Ford, Mara Averick, Mike Hoye, Greg Wilson
  PLOS Computational Biology, 15(9), pp. e1007296, 2019
  DOI: 10.1371/journal.pcbi.1007296
• Open Science in Software Engineering
  Daniel Méndez Fernández, Daniel Graziotin, Stefan Wagner, Heidi Seibold
  2019
• The State of Sustainable Research Software: Learning from the Workshop on Sustainable Software for Science: Practice and Experiences (WSSSPE5.1)
  Daniel S. Katz, Stephan Druskat, Robert Haines, Caroline Jay, Alexander Struck
  Journal of Open Research Software, 7, 2019
  DOI: 10/gf5tgr
• Recognizing competencies vs. completion vs. participation: Ideal roles for web-enabled digital badges
  Daniel T. Hickey, Grant T. Chartrand
  Education and Information Technologies, 25(2), pp. 943--956, 2019
  DOI: 10.1007/s10639-019-10000-w
• SortingHat: Wizardry on Software Project Members
  David Moreno, Santiago Dueñas, Valerio Cosentino, Miguel Angel Fernandez, Ahmed Zerouali, Gregorio Robles, Jesus M. Gonzalez-Barahona
  Proceedings of the 2019 IEEE/ACM 41^st International Conference on Software Engineering: Companion Proceedings (ICSE-Companion), pp. 51--54, 2019
  DOI: 10.1109/icse-companion.2019.00036
• The changing role of the software engineer
  Edward Meade, Emma O'Keeffe, Niall Lyons, Dean Lynch, Murat Yilmaz, Ulas Gulec, Rory V. O'Connor, Paul M. Clarke
  Systems, software and services process improvement, pp. 682--694, 2019
  DOI: 10.1007/978-3-030-28005-5_53
• Getting Research Software to Work: A Case Study on Artifact Evaluation for OOPSLA 2019
  Erin Dahlgren
  2019
• How successfully is open-source research software adopted? Results and implications of surveying the users of a sensitivity analysis toolbox
  Francesca Pianosi, Fanny Sarrazin, Thorsten Wagener
  Environmental Modelling & Software, pp. 104579--104579, 2019
  DOI: 10/ggc6j8
• RSE4NFDI - Safeguarding software sustainability in the NFDI
  Frank Löffler, Martin Hammitzsch, Ina Schieferdecker, Daniel Nüst, Stephan Druskat
  2019
  DOI: 10/gf2hxr
• Generic tools and individual research needs in the Digital Humanities – Can agile development help?
  Gerhard Heyer, Christian Kahmann, Cathleen Kantner
  , pp. 175--180, 2019
  DOI: 10/ggnd4c
• Towards a New Peer Review Concept for Scientific Computing ensuring Technical Quality, Software Sustainability, and Result Reproducibility
  Hartwig Anzt, Terry Cojean, Eileen Kühn
  PAMM, 19(1), 2019
  DOI: 10/ggnd39
• D2.1 Report on FAIR requirements for persistence and interoperability 2019
  Heikki Lehväslaiho, Jessica Parland-von Essen, Claudia Behnke, Heidi Laine, Leah Riungu-Kalliosaari, Yann Le Franc, Christine Staiger
  2019
  DOI: 10.5281/zenodo.3557381
• Naming the Pain in Developing Scientific Software
  Igor Scaliante Wiese, Ivanilton Polato, Gustavo Pinto
  IEEE Software, 2019
  DOI: 10.1109/ms.2019.2899838
• Which Are the Tools Available for Scholars? A Review of Assisting Software for Authors during Peer Reviewing Process
  J. Israel Martı\ʼnez-López, Samantha Barrón-González, Alejandro Martı\ʼnez López
  Publications, 7(3), pp. 59--59, 2019
  DOI: 10/ggcmcq
• Professional Development of Digital Competences: Standardised Frameworks Supporting Evolving Digital Badging Practices
  Jaana Kullaslahti, Sanna Ruhalahti, Sanna Brauer
  Journal of Siberian Federal University. Humanities & Social Sciences, 12(2), pp. 175--186, 2019
  DOI: 10.17516/1997-1370-0387
• Assessing data availability and research reproducibility in hydrology and water resources
  James H. Stagge, David E. Rosenberg, Adel M. Abdallah, Hadia Akbar, Nour A. Attallah, Ryan James
  Scientific Data, 6(1), pp. 190030, 2019
  DOI: 10.1038/sdata.2019.30
• Concerns of young protesters are justified
  Jennifer Sills, Gregor Hagedorn, Peter Kalmus, Michael Mann, Sara Vicca, Joke Van den Berge, Jean-Pascal van Ypersele, Dominique Bourg, Jan Rotmans, Roope Kaaronen, Stefan Rahmstorf, Helga Kromp-Kolb, Gottfried Kirchengast, Reto Knutti, Sonia I. Seneviratne, Philippe Thalmann, Raven Cretney, Alison Green, Kevin Anderson, Martin Hedberg, Douglas Nilsson, Amita Kuttner, Katharine Hayhoe
  Science, 364(6436), pp. 139--140, 2019
  DOI: 10.1126/science.aax3807
• Implementation and relevance of FAIR data principles in biopharmaceutical R&D
  John Wise, Alexandra Grebe de Barron, Andrea Splendiani, Beeta Balali-Mood, Drashtti Vasant, Eric Little, Gaspare Mellino, Ian Harrow, Ian Smith, Jan Taubert, Kees van Bochove, Martin Romacker, Peter Walgemoed, Rafael C. Jimenez, Rainer Winnenburg, Tom Plasterer, Vibhor Gupta, Victoria Hedley
  Drug Discovery Today, 24(4), pp. 933--938, 2019
  DOI: 10.1016/j.drudis.2019.01.008
• D3.1 FAIR Policy Landscape Analysis
  Joy Davidson, Claudia Engelhardt, Vanessa Proudman, Lennart Stoy, Angus Whyte
  2019
  DOI: 10.5281/zenodo.3558173
• Towards an HPC Certification Program
  Julian Kunkel, Kai Himstedt, Nathanael Hübbe, Hinnerk Stüben, Sandra Schröer, Michael Kuhn, Matthias Riebisch, Stephan Olbrich, Thomas Ludwig, Weronika Filinger, Jean-Thomas Acquaviva, Anja Gerbes, Lev Lafayette
  The Journal of Computational Science Education, 10(1), pp. 88--89, 2019
  DOI: 10.22369/issn.2153-4136/10/1/14
• Sustainable Research Software Hand-Over
  Jörg Fehr, Christian Himpe, Stephan Rave, Jens Saak
  2019
  http://arxiv.org/abs/1909.09469v1
• „Möchten Sie das Programm wirklich löschen?
  Jörg Hörnschemeyer
  Quellen und Forschungen aus italienischen Archiven und Bibliotheken, 99(1), pp. 491--501, 2019
  DOI: 10/ggnd4d
• Challenges of measuring software impact through citations: An examination of the lme4 R package
  Kai Li, Pei-Ying Chen, Erjia Yan
  Journal of Informetrics, 13(1), pp. 449--461, 2019
  DOI: 10/gf8qz5
• Tracking citations to research software via PIDs
  Lars H. Nielsen, Stephanie Van De Sandt
  2019
  DOI: 10/ggcmcr
• What Makes Research Software Sustainable? An Interview Study With Research Software Engineers
  Mario Rosado de Souza, Robert Haines, Markel Vigo, Caroline Jay
  CoRR, abs/1903.06039, 2019
  http://arxiv.org/abs/1903.06039
• Addendum: The FAIR Guiding Principles for scientific data management and stewardship
  Mark D. Wilkinson, Michel Dumontier, Ijsbrand Jan Aalbersberg, Gabrielle Appleton, Myles Axton, Arie Baak, Niklas Blomberg, Jan-Willem Boiten, Luiz Bonino da Silva Santos, Philip E. Bourne, Jildau Bouwman, Anthony J. Brookes, Tim Clark, Mercè Crosas, Ingrid Dillo, Olivier Dumon, Scott Edmunds, Chris T. Evelo, Richard Finkers, Alejandra Gonzalez-Beltran, Alasdair J. G. Gray, Paul Groth, Carole Goble, Jeffrey S. Grethe, Jaap Heringa, Peter A. C. 't Hoen, Rob Hooft, Tobias Kuhn, Ruben Kok, Joost Kok, Scott J. Lusher, Maryann E. Martone, Albert Mons, Abel L. Packer, Bengt Persson, Philippe Rocca-Serra, Marco Roos, Rene van Schaik, Susanna-Assunta Sansone, Erik Schultes, Thierry Sengstag, Ted Slater, George Strawn, Morris A. Swertz, Mark Thompson, Johan van der Lei, Erik van Mulligen, Jan Velterop, Andra Waagmeester, Peter Wittenburg, Katherine Wolstencroft, Jun Zhao, Barend Mons
  Scientific Data, 6(1), 2019
  DOI: 10.1038/s41597-019-0009-6
• Happy Belly Bioinformatics: an open-source resource dedicated to helping biologists utilize bioinformatics
  Michael Lee
  Journal of Open Source Education, 2(19), pp. 53, 2019
  DOI: 10.21105/jose.00053
• Making Open Source Research Software Visible: A Path to Better Sustainability?
  Neil Chue Hong
  2019
  https://www.software.ac.uk/blog/2019-09-12-making-open-source-research-software-visible-path-better-sustainability
• Science needs to rethink how it interacts with big data: Five principles for effective scientific big data systems
  Niall H. Robinson, Joe Hamman, Ryan Abernathey
  2019
  http://arxiv.org/pdf/1908.03356v1
• Susereum: Towards a Reward Structure for Sustainable Scientific Research Software
  Omar Badreddin, Wahab Hamou-Lhadj, Swapnil Chauhan
  , pp. 51--54, 2019
  DOI: 10.1109/SE4Science.2019.00015
• D6.1 Overview of needs for competence centres
  Patricia Herterich, Joy Davidson, Angus Whyte, Laura Molloy, Brian Matthews, Gabin Kayumbi Kabeya
  2019
  DOI: 10.5281/zenodo.3549791
• Building Transparency and Trustworthiness in Inductive Research Through Computer-Aided Qualitative Data Analysis Software
  Paula O'Kane, Anne Smith, Michael P. Lerman
  Organizational Research Methods, pp. 109442811986501--109442811986501, 2019
  DOI: 10/gf63wz
• Bionitio: demonstrating and facilitating best practices for bioinformatics command-line software
  Peter Georgeson, Anna Syme, Clare Sloggett, Jessica Chung, Harriet Dashnow, Michael Milton, Andrew Lonsdale, David Powell, Torsten Seemann, Bernard Pope
  GigaScience, 8(9), 2019
  DOI: 10.1093/gigascience/giz109
• Establishing a computational biology flipped classroom
  Phillip Compeau
  PLOS Computational Biology, 15(5), pp. e1006764, 2019
  DOI: 10.1371/journal.pcbi.1006764
• A FAIRer future
  Radovan Bast
  Nature Physics, 15(8), pp. 728--730, 2019
  DOI: 10/gf69tq
• Position Paper: Towards Usability as a First-Class Quality of HPC Scientific Software
  Reed Milewicz, Paige Rodeghero
  Proceedings of the 2019 IEEE/ACM 14^th International Workshop on Software Engineering for Science (SE4Science), 2019
  DOI: 10.1109/se4science.2019.00012
• Towards FAIR protocols and workflows: The OpenPREDICT case study
  Remzi Celebi, Joao Rebelo Moreira, Ahmed A. Hassan, Sandeep Ayyar, Lars Ridder, Tobias Kuhn, Michel Dumontier
  arXiv:1911.09531 [cs], 2019
  http://arxiv.org/abs/1911.09531
• Software Heritage. A revolutionary infrastructure for Open Science
  Roberto Di Cosmo
  2019
  https://annex.softwareheritage.org/public/talks/2019/2019-02-05-MaxPlankDL.pdf
• Curated Archiving of Research Software Artifacts: lessons learned from the French open archive (HAL)
  Roberto Di Cosmo, Morane Gruenpeter, Bruno Marmol, Alain Monteil, Laurent Romary, Jozefina Sadowska
  2019
  https://hal.inria.fr/hal-02475835
• The Mastery Rubric for Bioinformatics: A tool to support design and evaluation of career-spanning education and training
  Rochelle E. Tractenberg, Jessica M. Lindvall, Teresa K. Attwood, Allegra Via
  PLOS ONE, 14(11), pp. e0225256, 2019
  DOI: 10.1371/journal.pone.0225256
• Workshop deRSE19: Libraries for Research Software & Engineers
  Ronny Gey, Katrin Leinweber, Alexander Struck, Robert Strøtgen, Christian Pietsch
  LIBREAS. Library Ideas, 36, 2019
  DOI: 10.18452/21407
• The Future Is Open: Open-Source Tools for Behavioral Neuroscience Research
  Samantha R. White, Linda M. Amarante, Alexxai V. Kravitz, Mark Laubach
  eNeuro, 6(4), pp. ENEURO.0223--19.2019, 2019
  DOI: 10/ggcmcv
• Online scaffolding in digital open badge-driven learning
  Sanna Brauer, Anne-Maria Korhonen, Pirkko Siklander
  Educational Research, 61(1), pp. 53--69, 2019
  DOI: 10.1080/00131881.2018.1562953
• Improving the usability and archival stability of bioinformatics software
  Serghei Mangul, Lana S. Martin, Eleazar Eskin, Ran Blekhman
  Genome Biology, 20(1), 2019
  DOI: 10/ggc6j6
• Challenges and recommendations to improve the installability and archival stability of omics computational tools
  Serghei Mangul, Thiago Mosqueiro, Richard J. Abdill, Dat Duong, Keith Mitchell, Varuni Sarwal, Brian Hill, Jaqueline Brito, Russell Jared Littman, Benjamin Statz, Angela Ka-Mei Lam, Gargi Dayama, Laura Grieneisen, Lana S. Martin, Jonathan Flint, Eleazar Eskin, Ran Blekhman
  PLOS Biology, 17(6), pp. e3000333, 2019
  DOI: 10.1371/journal.pbio.3000333
• Software and their Dependencies in Research Citation Graphs
  Stephan Druskat
  2019
  http://arxiv.org/abs/1906.06141v1
• Dare to be mair than just FAIR! - FAIR PLAY to research software, courtesy of RSEs
  Stephan Druskat
  , pp. 6137762 Bytes, 2019
  DOI: 10.6084/M9.FIGSHARE.10565717
• Practice meets Principle: Tracking Software and Data Citations to Zenodo DOIs
  Stephanie van de Sandt, Lars Holm Nielsen, Alexandros Ioannidis, August Muench, Edwin Henneken, Alberto Accomazzi, Chiara Bigarella, Jose Benito Gonzalez Lopez, Sünje Dallmeier-Tiessen
  2019
  https://arxiv.org/pdf/1911.00295.pdf
• A Badge Design Framework for a Gamified Learning Environment: Cases Analysis and Literature Review for Badge Design
  Sungjin Park, Sangkyun Kim
  JMIR Serious Games, 7(2), pp. e14342, 2019
  DOI: 10.2196/14342
• Empfehlungen zur Implementierung von Leit- und Richtlinien zum Umgang mit Forschungssoftware an den Helmholtz-Zentren. Positionspapier
  Task Group Forschungssoftware Des Arbeitskreises Open Science Der Helmholtz-Gemeinschaft
  2019
  DOI: 10/ggzwsc
• Muster-Richtlinie Nachhaltige Forschungssoftware an den Helmholtz-Zentren
  Task Group Forschungssoftware Des Arbeitskreises Open Science Der Helmholtz-Gemeinschaft
  2019
  DOI: 10/ggzwsd
• On the evaluation of research software: the CDUR procedure
  Teresa Gomez-Diaz, Tomas Recio
  F1000Research, 8, pp. 1353--1353, 2019
  DOI: 10/gf69tr
• A global perspective on evolving bioinformatics and data science training needs
  Teresa K. Attwood, Sarah Blackford, Michelle D. Brazas, Angela Davies, Maria Victoria Schneider
  Briefings in Bioinformatics, 20(2), pp. 398--404, 2019
  DOI: 10.1093/bib/bbx100
• Challenges for Verifying and Validating Scientific Software in Computational Materials Science
  Thomas Vogel, Stephan Druskat, Markus Scheidgen, Claudia Draxl, Lars Grunske
  2019 IEEE/ACM 14ᵗʰ International Workshop on Software Engineering for Science (SE4Science), 2019
  DOI: 10.1109/SE4Science.2019.00010
• Analytics and insights about cultivating a software engineering community at DLR
  Tobias Schlauch, Carina Haupt, Michael Meinel, Andreas Schreiber
  2019 IEEE aerospace conference, 2019
  DOI: 10.1109/AERO.2019.8741902
• Making Data and Workflows Findable for Machines
  Tobias Weigel, Ulrich Schwardmann, Jens Klump, Sofiane Bendoukha, Robert Quick
  Data Intelligence, 2(1-2), pp. 40--46, 2019
  DOI: 10.1162/dint_a_00026
• A Thousand and One Software for Proteomics: Tales of the Toolmakers of Science
  Vasileios Tsiamis, Hans-Ioan Ienasescu, Dovydas Gabrielaitis, Magnus Palmblad, Veit Schwämmle, Jon Ison
  Journal of Proteome Research, 2019
  DOI: 10/gf69tt
• Microservices as Architectural Style for Research Software
  Wilhelm Hasselbring
  2019
  http://oceanrep.geomar.de/47554/
• FAIR and Open Computer Science Research Software
  Wilhelm Hasselbring, Leslie Carr, Simon Hettrick, Heather Packer, Thanassis Tiropanis
  2019
• (the struggle) Towards an open source policy
  Y. G. Grange, T. Jürges, T. J. Dijkema, R. Halfwerk, G. W. Schoonderbeek
  2019
  http://arxiv.org/abs/1911.00534v1
• Open Source Software Sustainability Models: Initial White Paper from the Informatics Technology for Cancer Research Sustainability and Industry Partnership Work Group
  Y. Ye, R. D. Boyce, M. K. Davis, K. Elliston, C. Davatzikos, A. Fedorov, J. C. Fillion-Robin, I. Foster, J. Gilbertson, M. Heiskanen, J. Klemm, A. Lasso, J. V. Miller, M. Morgan, S. Pieper, B. Raumann, B. Sarachan, G. Savova, J. C. Silverstein, D. Taylor, J. Zelnis, G. Q. Zhang, M. J. Becich
  2019
• Using digital badges as goal-setting facilitators: a multiple case study
  Zui Cheng, Jennifer C. Richardson, Timothy J. Newby
  Journal of Computing in Higher Education, 32(2), pp. 406--428, 2019
  DOI: 10.1007/s12528-019-09240-z

2018

• Research Software Discovery: Challenges, Risks And Opportunities
  Alexander Struck
  IEEE eScience 2018, 2018
  DOI: 10/gfvpq5
• Research Software Discovery: An Overview
  Alexander Struck
  2018 IEEE 14th International Conference on e-Science (e-Science), pp. 33--37, 2018
  DOI: 10.1109/eScience.2018.00016
• Software Engineering for Computational Science: Past, Present, Future
  Arne Johanson, Wilhelm Hasselbring
  Computing in Science & Engineering, 20(2), pp. 90--109, 2018
  DOI: 10.1109/mcse.2018.021651343
• Adding sparkle to social coding: an empirical study of repository badges in the npm ecosystem
  Asher Trockman, Shurui Zhou, Christian Kästner, Bogdan Vasilescu
  Proceedings of the 40^th International Conference on Software Engineering (ICSE 2018), pp. 511--522, 2018
  DOI: 10.1145/3180155.3180209
• Packaging data analytical work reproducibly using R (and friends)
  Ben Marwick, Carl Boettiger, Lincoln Mullen
  2018
  DOI: 10.7287/peerj.preprints.3192v2
• Ten simple rules for documenting scientific software
  Benjamin D. Lee
  PLOS Computational Biology, 14(12), pp. e1006561--e1006561, 2018
  DOI: 10/gfrk2t
• Practical Computational Reproducibility in the Life Sciences
  Björn Grüning, John Chilton, Johannes Köster, Ryan Dale, Nicola Soranzo, Marius van den Beek, Jeremy Goecks, Rolf Backofen, Anton Nekrutenko, James Taylor
  Cell Systems, 6(6), pp. 631--635--631--635, 2018
  DOI: 10.1016/j.cels.2018.03.014
• Community-Driven Data Analysis Training for Biology
  Bérénice Batut, Saskia Hiltemann, Andrea Bagnacani, Dannon Baker, Vivek Bhardwaj, Clemens Blank, Anthony Bretaudeau, Loraine Brillet-Guéguen, Martin Čech, John Chilton, Dave Clements, Olivia Doppelt-Azeroual, Anika Erxleben, Mallory Ann Freeberg, Simon Gladman, Youri Hoogstrate, Hans-Rudolf Hotz, Torsten Houwaart, Pratik Jagtap, Delphine Larivière, Gildas Le Corguillé, Thomas Manke, Fabien Mareuil, Fidel Ramírez, Devon Ryan, Florian Christoph Sigloch, Nicola Soranzo, Joachim Wolff, Pavankumar Videm, Markus Wolfien, Aisanjiang Wubuli, Dilmurat Yusuf, James Taylor, Rolf Backofen, Anton Nekrutenko, Björn Grüning
  Cell Systems, 6(6), pp. 752--758.e1, 2018
  DOI: 10.1016/j.cels.2018.05.012
• The software engineering initiative of DLR
  Carina Haupt, Tobias Schlauch, Michael Meinel
  Proceedings of the SE4Science '18: 2018 IEEE/ACM 13^th International Workshop on Software Engineering for Science, pp. 16--19, 2018
  DOI: 10.1145/3194747.3194749
• The software engineering initiative of DLR: overcome the obstacles and develop sustainable software
  Carina Haupt, Michael Meinel, Tobias Schlauch
  , pp. 16--19, 2018
  DOI: 10/gf3twn
• Presentations for EGU GA Townhall meeting: Research Software Engineers in the Geosciences
  Daniel Nüst, Martin Hammitzsch, David Topping, Niels Drost, Bernadette Fritzsch, Anusuriya Devaraju
  2018
  DOI: 10/gfzgkh
• Langzeitverfügbarkeit von wissenschaftlicher Software im Bereich historisch-kritischer Musikedition
  Daniel Röwenstrunk
  Bibliothek Forschung und Praxis, 42(2), pp. 302--308, 2018
  DOI: 10/ggcmcs
• Community Organizations: Changing the Culture in Which Research Software Is Developed and Sustained
  Daniel S. Katz, Lois Curfman McInnes, David E. Bernholdt, Abigail Cabunoc Mayes, Neil P. Chue Hong, Jonah Duckles, Sandra Gesing, Michael A. Heroux, Simon Hettrick, Rafael C. Jimenez, Marlon Pierce, Belinda Weaver, Nancy Wilkins-Diehr
  Computing in Science & Engineering, pp. 1--1, 2018
  DOI: 10/gfvpq3
• Commission Recommendation (EU) 2018/790 of 25 April 2018 on access to and preservation of scientific information
  European Commission
  Official Journal of the European Union, 61(134), pp. 12--18, 2018
  http://data.europa.eu/eli/reco/2018/790/oj
• An Introduction to Applied Bioinformatics: a free, open, and interactive text.
  Evan Bolyen, Jai Ram Rideout, John Chase, T. Anders Pitman, Arron Shiffer, Willow Mercurio, Matthew R. Dillon, J. Gregory Caporaso
  Journal of Open Source Education, 1(5), pp. 27, 2018
  DOI: 10.21105/jose.00027
• The future of scientific workflows
  Ewa Deelman, Tom Peterka, Ilkay Altintas, Christopher D Carothers, Kerstin Kleese van Dam, Kenneth Moreland, Manish Parashar, Lavanya Ramakrishnan, Michela Taufer, Jeffrey Vetter
  International Journal of High Performance Computing Applications, 32(1), pp. 159--175, 2018
• SARA-Dienst: Software langfristig verfügbar machen
  Franziska Rapp, Stefan Kombrink, Volodymyr Kushnarenko, Matthias Fratz, Daniel Scharon
  o-bib. Das offene Bibliotheksjournal / herausgegeben vom VDB, Bd. 5, pp. Nr. 2 (2018)--, 2018
  DOI: 10/gfvpqt
• Enabling precision medicine via standard communication of HTS provenance, analysis, and results
  Gil Alterovitz, Dennis Dean, Carole Goble, Michael R. Crusoe, Stian Soiland-Reyes, Amanda Bell, Anais Hayes, Anita Suresh, Anjan Purkayastha, Charles H. King, Dan Taylor, Elaine Johanson, Elaine E. Thompson, Eric Donaldson, Hiroki Morizono, Hsinyi Tsang, Jeet K. Vora, Jeremy Goecks, Jianchao Yao, Jonas S. Almeida, Jonathon Keeney, KanakaDurga Addepalli, Konstantinos Krampis, Krista M. Smith, Lydia Guo, Mark Walderhaug, Marco Schito, Matthew Ezewudo, Nuria Guimera, Paul Walsh, Robel Kahsay, Srikanth Gottipati, Timothy C. Rodwell, Toby Bloom, Yuching Lai, Vahan Simonyan, Raja Mazumder
  PLOS Biology, 16(12), pp. e3000099, 2018
  DOI: 10.1371/journal.pbio.3000099
• Building the Universal Archive of Source Code
  Jean-François Abramatic, Roberto Di Cosmo, Stefano Zacchiroli
  Communications of the ACM, 61(10), pp. 29--31, 2018
  DOI: 10/gfvpqx
• A toolkit for data transparency takes shape
  Jeffrey M. Perkel
  Nature, 560(7719), pp. 513--515, 2018
  DOI: 10/gd2xs9
• Perspectives on Reproducibility and Sustainability of Open-Source Scientific Software from Seven Years of the Dedalus Project
  Jeffrey S. Oishi, Benjamin P. Brown, Keaton J. Burns, Daniel Lecoanet, Geoffrey M. Vasil
  2018
  DOI: 10/gf2hxs
• Excuse Me, Do You Have a Moment to Talk About Version Control?
  Jennifer Bryan
  The American Statistician, 72(1), pp. 20--27, 2018
  DOI: 10.1080/00031305.2017.1399928
• Building a Sustainable Structure for Research Software Engineering Activities
  Jeremy Cohen, Daniel S. Katz, Michelle Barker, Robert Haines, Neil Chue Hong
  2018 IEEE 14^th International Conference on e-Science (e-Science), 2018
  DOI: 10/gfvpq4
• Library Carpentry: Software Skills Training for Library Professionals
  Jez Cope, James Baker
  International Journal of Digital Curation, 12(2), pp. 266--273, 2018
  DOI: 10.2218/ijdc.v12i2.576
• Research data management in the French National Research Center (CNRS)
  Joachim Schöpfel, Coline Ferrant, Francis André, Renaud Fabre
  Data Technologies and Applications, 52(2), pp. 248--265, 2018
  DOI: 10.1108/DTA-01-2017-0005
• Digital Badges for Motivating Introductory Programmers: Qualitative Findings from Focus Groups
  Lisa Facey-Shaw, Marcus Specht, Jeanette Bartley-Bryan
  2018 IEEE Frontiers in Education Conference (FIE), 2018
  DOI: 10.1109/fie.2018.8659227
• Semantic Software Metadata for Workflow Exploration and Evolution
  Lucas Augusto M. C. Carvalho, Daniel Garijo, Claudia Bauzer Medeiros, Yolanda Gil
  2018 IEEE 14th International Conference on e-Science (e-Science), pp. 431--441, 2018
  DOI: 10.1109/eScience.2018.00132
• The FAIR guiding principles for data stewardship: fair enough?
  Martin Boeckhout, Gerhard A. Zielhuis, Annelien L. Bredenoord
  European Journal of Human Genetics, 26(7), pp. 931--936, 2018
  DOI: 10.1038/s41431-018-0160-0
• Ten simple rules for biologists learning to program
  Maureen A. Carey, Jason A. Papin
  PLOS Computational Biology, 14(1), pp. e1005871, 2018
  DOI: 10.1371/journal.pcbi.1005871
• Infrastructure and Tools for Teaching Computing Throughout the Statistical Curriculum
  Mine Çetinkaya-Rundel, Colin Rundel
  The American Statistician, 72(1), pp. 58--65, 2018
  DOI: 10.1080/00031305.2017.1397549
• The development and application of bioinformatics core competencies to improve bioinformatics training and education
  Nicola Mulder, Russell Schwartz, Michelle D. Brazas, Cath Brooksbank, Bruno Gaeta, Sarah L. Morgan, Mark A. Pauley, Anne Rosenwald, Gabriella Rustici, Michael Sierk, Tandy Warnow, Lonnie Welch
  PLOS Computational Biology, 14(2), pp. e1005772, 2018
  DOI: 10.1371/journal.pcbi.1005772
• Use of digital badges for training in digital skills within higher education
  Oriol Borrás-Gené
  2018 International Symposium on Computers in Education (SIIE), 2018
  DOI: 10.1109/siie.2018.8586734
• PARTHENOS Guidelines to FAIRify data management and make data reusable
  PARTHENOS, Hella Hollander, Francesca Morselli, Frank Uiterwaal, Femmy Admiraal, Thorsten Trippel, Sara Di Giorgio
  2018
  DOI: 10.5281/zenodo.2668479
• A large-scale analysis of bioinformatics code on GitHub
  Pamela H. Russell, Rachel L. Johnson, Shreyas Ananthan, Benjamin Harnke, Nichole E. Carlson
  PLOS ONE, 13(10), pp. e0205898, 2018
  DOI: 10.1371/journal.pone.0205898
• Enhancing Reuse of Data and Biological Material in Medical Research: From FAIR to FAIR-Health
  Petr Holub, Florian Kohlmayer, Fabian Prasser, Michaela Th. Mayrhofer, Irene Schlünder, Gillian M. Martin, Sara Casati, Lefteris Koumakis, Andrea Wutte, Łukasz Kozera, Dominik Strapagiel, Gabriele Anton, Gianluigi Zanetti, Osman Ugur Sezerman, Maimuna Mendy, Dalibor Valík, Marialuisa Lavitrano, Georges Dagher, Kurt Zatloukal, GertJan B. van Ommen, Jan-Eric Litton
  Biopreservation and Biobanking, 16(2), pp. 97--105, 2018
  DOI: 10.1089/bio.2017.0110
• Before reproducibility must come preproducibility
  Philip B. Stark
  Nature, 557(7707), pp. 613--613, 2018
  DOI: 10/gdh9xc
• Identifiers for Digital Objects: the Case of Software Source Code Preservation
  Roberto Di Cosmo, Morane Gruenpeter, Stefano Zacchiroli
  iPRES 2018 - 15^th International Conference on Digital Preservation, 2018
  https://hal.archives-ouvertes.fr/hal-01865790 https://hal.archives-ouvertes.fr/hal-01865790/file/main.pdf
• Ireland's Higher Education Teachers Have a National Professional Development Framework, Now What?
  Roisin Donnelly, Terry Maguire
  Transforming our World Through Design, Diversity and Education, 256, pp. 655--666, 2018
  DOI: 10.3233/978-1-61499-923-2-655
• Building a local community of practice in scientific programming for life scientists
  Sarah L. R. Stevens, Mateusz Kuzak, Carlos Martinez, Aurelia Moser, Petra Bleeker, Marc Galland
  PLOS Biology, 16(11), pp. e2005561, 2018
  DOI: 10.1371/journal.pbio.2005561
• Challenges and recommendations to improve installability and archival stability of omics computational tools
  Serghei Mangul, Thiago Mosqueiro, Richard J. Abdill, Dat Duong, Keith Mitchell, Varuni Sarwal, Brian Hill, Jaqueline Brito, Russell Jared Littman, Benjamin Statz, Angela Ka-Mei Lam, Gargi Dayama, Laura Grieneisen, Lana S. Martin, Jonathan Flint, Eleazar Eskin, Ran Blekhman
  2018
  DOI: 10/gfgntm
• An Empirical Study on Security Knowledge Sharing and Learning in Open Source Software Communities
  Shao-Fang Wen
  Computers, 7(4), pp. 49--49, 2018
  DOI: 10/ggcmct
• ProvBook: Provenance-based Semantic Enrichment of Interactive Notebooks for Reproducibility
  Sheeba Samuel, Birgitta König-Ries
  2018
• Digital badges, do they live up to the hype?
  Sherre Roy, Damien Clark
  British Journal of Educational Technology, 50(5), pp. 2619--2636, 2018
  DOI: 10.1111/bjet.12709
• Computational astrophysics for the future
  Simon Portegies Zwart
  Science, 361(6406), pp. 979--980, 2018
  DOI: 10/gd546p
• Checklist for a Software Management Plan
  The Software Sustainability Institute
  2018
  DOI: 10/gf2hxq
• The use of digital badges by undergraduate nursing students: A three-year study
  Timna Garnett, Didy Button
  Nurse Education in Practice, 32, pp. 1--8, 2018
  DOI: 10.1016/j.nepr.2018.06.013
• Software-Engineering-Empfehlungen des DLR
  Tobias Schlauch, Michael Meinel, Carina Haupt
  2018
  DOI: 10/gf3twm
• Interoperable and accessible census and survey data from IPUMS
  Tracy A. Kugler, Catherine A. Fitch
  Scientific Data, 5(1), pp. 180007, 2018
  DOI: 10.1038/sdata.2018.7
• Testing Scientific Software: A Systematic Literature Review
  Upulee Kanewala, James M. Bieman
  2018
  http://arxiv.org/abs/1804.01954v1
• An empirical analysis of journal policy effectiveness for computational reproducibility
  Victoria Stodden, Jennifer Seiler, Zhaokun Ma
  Proceedings of the National Academy of Sciences, 115(11), pp. 2584--2589, 2018
  DOI: 10/gc8gkw
• Software Articles and Open Source Research Software: The Why, the What, and the How
  Vincent Cicirello
  EAI Endorsed Transactions on Cognitive Communications, pp. 168507--168507, 2018
  DOI: 10.4108/eai.28-1-2021.168507

2017

• Engineering Academic Software (Dagstuhl Perspectives Workshop 16252)
  Alice Allen, Cecilia Aragon, Christoph Becker, Jeffrey Carver, Andrei Chis, Benoit Combemale, Mike Croucher, Kevin Crowston, Daniel Garijo, Ashish Gehani, Carole Goble, Robert Haines, Robert Hirschfeld, James Howison, Kathryn Huff, Caroline Jay, Daniel S. Katz, Claude Kirchner, Katie Kuksenok, Ralf Lämmel, Oscar Nierstrasz, Matt Turk, Rob van Nieuwpoort, Matthew Vaughn, Jurgen J. Vinju
  Dagstuhl Manifestos, 6(1), pp. 1--20, 2017
  DOI: 10/b7xv
• Research Software Engineers: State Of The Nation Report 2017
  Alys Brett, Michael Croucher, Robert Haines, Simon Hettrick, James Hetherington, Mark Stillwell, Claire Wyatt
  2017
  DOI: 10/gfvpqz
• Zugang zu und Nachnutzung von wissenschaftlicher Software.
  Arbeitskreis Open Science
  2017
  https://os.helmholtz.de/index.php?id=2766
• Evaluation of the OntoSoft Ontology for describing metadata for legacy hydrologic modeling software
  Bakinam T. Essawy, Jonathan L. Goodall, Hao Xu, Yolanda Gil
  Environmental Modelling & Software, 92, pp. 317--329, 2017
  DOI: 10.1016/j.envsoft.2017.01.024
• Cloudy, increasingly FAIR; revisiting the FAIR Data guiding principles for the European Open Science Cloud
  Barend Mons, Cameron Neylon, Jan Velterop, Michel Dumontier, Luiz Olavo Bonino da Silva Santos, Mark D. Wilkinson
  Information Services & Use, 37(1), pp. 49--56, 2017
  DOI: 10.3233/ISU-170824
• Determinants of Mobile Learning in Indigenous/Cultural Contexts: The Phenomenon in Canadian First Nations
  Ben Akoh
  Tomorrow's Learning: Involving Everyone, 515, pp. 24--34, 2017
  DOI: 10.1007/978-3-319-74310-3_4
• Track 1 Paper: The Software Engineering Community at DLR -- How we got where we are
  Carina Haupt, Tobias Schlauch
  Proceedings of the Workshop on Sustainable Software for Science: Practice and Experiences (WSSSPE5.1), 2017
  DOI: 10.6084/m9.figshare.5331703
• Software Systems Engineering programmes a capability approach
  Carl Landwehr, Jochen Ludewig, Robert Meersman, David Lorge Parnas, Peretz Shoval, Yair Wand, David Weiss, Elaine Weyuker
  Journal of Systems and Software, 125, pp. 354--364, 2017
  DOI: 10.1016/j.jss.2016.12.016
• The Research Software Engineer- An Emerging New Role in Academia in the UK.pdf
  Chris Richardson
  2017
  DOI: 10/gf5tgv
• How Can We Make Computing Lessons More Inclusive?
  Chris Shelton
  Tomorrow's Learning: Involving Everyone, 515, pp. 506--514, 2017
  DOI: 10.1007/978-3-319-74310-3_51
• Computing Camps for Girls – A First-Time Experience at the University of Limerick
  Clare McInerney, Anna-Lena Lamprecht, Tiziana Margaria
  Tomorrow's Learning: Involving Everyone, 515, pp. 494--505, 2017
  DOI: 10.1007/978-3-319-74310-3_50
• Abstract, link, publish, exploit: An end to end framework for workflow sharing
  Daniel Garijo, Yolanda Gil, Oscar Corcho
  Future Generation Computer Systems, 75, pp. 271--283, 2017
  DOI: 10.1016/j.future.2017.01.008
• On the Unhappiness of Software Developers
  Daniel Graziotin, Fabian Fagerholm, Xiaofeng Wang, Pekka Abrahamsson
  Proceedings of the 21^st International Conference on Evaluation and Assessment in Software Engineering - EASE'17, 2017
  DOI: 10/gfvpqv
• Software in Research: Underappreciated and Underrewarded
  Daniel S. Katz
  2017
  DOI: 10.6084/m9.figshare.5518933.v1
• Developing data interoperability using standards: A wheat community use case
  Esther Dzale Yeumo, Michael Alaux, Elizabeth Arnaud, Sophie Aubin, Ute Baumann, Patrice Buche, Laurel Cooper, Hanna Ćwiek-Kupczyńska, Robert P. Davey, Richard Allan Fulss, Clement Jonquet, Marie-Angélique Laporte, Pierre Larmande, Cyril Pommier, Vassilis Protonotarios, Carmen Reverte, Rosemary Shrestha, Imma Subirats, Aravind Venkatesan, Alex Whan, Hadi Quesneville
  F1000Research, 6, pp. 1843, 2017
  DOI: 10.12688/f1000research.12234.1
• BioContainers: an open-source and community-driven framework for software standardization
  Felipe da Veiga Leprevost, Björn A Grüning, Saulo Alves Aflitos, Hannes L. Röst, Julian Uszkoreit, Harald Barsnes, Marc Vaudel, Pablo Moreno, Laurent Gatto, Jonas Weber, Mingze Bai, Rafael C. Jimenez, Timo Sachsenberg, Julianus Pfeuffer, Roberto Vera Alvarez, Johannes Griss, Alexey I. Nesvizhskii, Yasset Perez-Riverol
  Bioinformatics, 33(16), pp. 2580--2582, 2017
  DOI: 10.1093/bioinformatics/btx192
• All biology is computational biology
  Florian Markowetz
  PLOS Biology, 15(3), pp. e2002050--e2002050, 2017
  DOI: 10/gf3krm
• Track 1 Paper: Good Usability Practices in Scientific Software Development
  Francisco Queiroz, Raniere Silva, Jonah Miller, Sandor Brockhauser, Hans Fangohr
  Proceedings of the Workshop on Sustainable Software for Science: Practice and Experiences (WSSSPE5.1), 2017
  DOI: 10.6084/m9.figshare.5331814
• SARA-Service: Langzeitverfügbarkeit und Publikation von Softwareartefakten
  Franziska Ackermann, Petra Enderle, Matthias Fratz, Vladimir Kushnarenko, Daniel Scharon, Pia Schmücker, Marcel Waldvogel, Stefan Wesner
  E-Science-Tage 2017: Forschungsdaten managen, 2017
  DOI: 10/gfvpq8
• Good enough practices in scientific computing
  Greg Wilson, Jennifer Bryan, Karen Cranston, Justin Kitzes, Lex Nederbragt, Tracy K. Teal
  PLOS Computational Biology, 13(6), pp. e1005510, 2017
  DOI: 10/gbkbwp
• Energy Efficiency: A New Concern for Application Software Developers
  Gustavo Pinto, Fernando Castor
  Communications of the ACM, 60(12), pp. 68--75, 2017
  DOI: 10.1145/3154384
• Track 2 Lightning Talk: Software Development Best Practices at the Netherlands eScience Center
  Jason Maassen, Niels Drost, Willem van Hage, Rob van Nieuwpoort
  Proceedings of the Workshop on Sustainable Software for Science: Practice and Experiences (WSSSPE5.1), 2017
  DOI: 10.6084/m9.figshare.5327587
• Game-Play: Effects of Online Gamified and Game-Based Learning on Dispositions, Abilities and Behaviours of Primary Learners
  Jawaher Alghamdi, Charlotte Holland
  Tomorrow's Learning: Involving Everyone, 515, pp. 55--63, 2017
  DOI: 10.1007/978-3-319-74310-3_7
• Badges for Visualization Micro-Certification
  Jeff Sale
  Blue Waters Webinars, 2017
  https://bluewaters.ncsa.illinois.edu/liferay-content/document-library/BW%20Webinars/Slides/Badges%20for%20Visualization%20Micro-Certification%20by%20Jeff%20Sale.pdf
• Democratizing data science through data science training
  John Darrell Van Horn, Lily Fierro, Jeana Kamdar, Jonathan Gordon, Crystal Stewart, Avnish Bhattrai, Sumiko Abe, Xiaoxiao Lei, Caroline O'Driscoll, Aakanchha Sinha, Priyambada Jain, Gully Burns, Kristina Lerman, José Luis Ambite
  Proceedings of the Pacific Symposium on Biocomputing 2018, pp. 292--303, 2017
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• Comment on ``Most computational hydrology is not reproducible, so is it really science?'' by Christopher Hutton et al.
  Juan A. Añel
  Water Resources Research, 53(3), pp. 2572--2574, 2017
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• Do badges increase user activity? A field experiment on the effects of gamification
  Juho Hamari
  Computers in Human Behavior, 71, pp. 469--478, 2017
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• Our path to better science in less time using open data science tools
  Julia S. Stewart Lowndes, Benjamin D. Best, Courtney Scarborough, Jamie C. Afflerbach, Melanie R. Frazier, Casey C. O'Hara, Ning Jiang, Benjamin S. Halpern
  Nature Ecology & Evolution, 1(6), 2017
  DOI: 10.1038/s41559-017-0160
• Helmholtz Open Science Workshop „Zugang zu und Nachnutzung von wissenschaftlicher Software``
  Katharina Sara Scheliga, Heinz Pampel, Erik Bernstein, Christoph Bruch, Wolfgang Zu Castell, Markus Diesmann, Bernadette Fritzsch, Jürgen Fuhrmann, Holger Haas, M. Hammitzsch, David Laehnemann, Alice McHardy, Uwe Konrad, Gianna Scharnberg, Andreas Schreiber, Dirk Steglich
  2017
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• ELIXIR-UK role in bioinformatics training at the national level and across ELIXIR [version 1; peer review: 4 approved, 1 approved with reservations]
  L. Larcombe, R. Hendricusdottir, T. K. Attwood, F. Bacall, N. Beard, L. J. Bellis, W. B. Dunn, J. M. Hancock, A. Nenadic, C. Orengo, B. Overduin, S.-A. Sansone, M. Thurston, M. R. Viant, C. L. Winder, C. A. Goble, C. P. Ponting, G. Rustici
  F1000Research, 6, pp. 952, 2017
  DOI: 10.12688/f1000research.11837.1
• Citations for Software: Providing Identification, Access and Recognition for Research Software
  Laura Soito, Lorraine J. Hwang
  International Journal of Digital Curation, 11(2), pp. 48--63, 2017
  DOI: 10/ggb7v6
• Ten Principles for Creating Usable Software for Science
  Lavanya Ramakrishnan, Daniel Gunter
  Proceedings of the 13^th International Conference on e-Science (e-Science), 2017
  DOI: 10.1109/escience.2017.34
• Unmet needs for analyzing biological big data: A survey of 704 NSF principal investigators
  Lindsay Barone, Jason Williams, David Micklos
  PLOS Computational Biology, 13(10), pp. e1005755, 2017
  DOI: 10.1371/journal.pcbi.1005755
• Ten Simple Rules for Developing Usable Software in Computational Biology
  Markus List, Peter Ebert, Felipe Albrecht
  PLOS Computational Biology, 13(1), pp. e1005265, 2017
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• Upon the Shoulders of Giants: Open-Source Hardware and Software in Analytical Chemistry
  Michael D. M. Dryden, Ryan Fobel, Christian Fobel, Aaron R. Wheeler
  Analytical Chemistry, 89(8), pp. 4330--4338, 2017
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• Plug gap in essential bioinformatics skills
  Michelle D. Brazas, Sarah Blackford, Teresa K. Attwood
  Nature, 544(7649), pp. 161--161, 2017
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• A global perspective on bioinformatics training needs
  Michelle D. Brazas, Cath Brooksbank, Rafael C. Jimenez, Sarah Blackford, Patricia M. Palagi, Javier De Las Rivas, B. F. Francis Ouellette, Judit Kumuthini, Eija Korpelainen, Fran Lewitter, Celia W.G. van Gelder, Nicola Mulder, Manuel Corpas, Maria Victoria Schneider, Tin Wee Tan, Dave Clements, Angela Davies, Teresa K. Attwood
  bioRxiv, pp. 098996, 2017
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• Ten simple rules for making research software more robust
  Morgan Taschuk, Greg Wilson
  PLOS Computational Biology, 13(4), pp. e1005412, 2017
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• Using Digital Badges for Developing High School Chemistry Laboratory Skills
  Naomi Hennah, Michael K. Seery
  Journal of Chemical Education, 94(7), pp. 844--848, 2017
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• Software – a different kind of research object?
  Neil Chue Hong
  2017
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• Four simple recommendations to encourage best practices in research software
  Rafael C. Jiménez, Mateusz Kuzak, Monther Alhamdoosh, Michelle Barker, Bérénice Batut, Mikael Borg, Salvador Capella-Gutierrez, Neil Chue Hong, Martin Cook, Manuel Corpas, Madison Flannery, Leyla Garcia, Josep Ll. Gelpí, Simon Gladman, Carole Goble, Montserrat González Ferreiro, Alejandra Gonzalez-Beltran, Philippa C. Griffin, Björn Grüning, Jonas Hagberg, Petr Holub, Rob Hooft, Jon Ison, Daniel S. Katz, Brane Leskošek, Federico López Gómez, Luis J. Oliveira, David Mellor, Rowland Mosbergen, Nicola Mulder, Yasset Perez-Riverol, Robert Pergl, Horst Pichler, Bernard Pope, Ferran Sanz, Maria V. Schneider, Victoria Stodden, Radosław Suchecki, Radka Svobodová Vařeková, Harry-Anton Talvik, Ilian Todorov, Andrew Treloar, Sonika Tyagi, Maarten van Gompel, Daniel Vaughan, Allegra Via, Xiaochuan Wang, Nathan S. Watson-Haigh, Steve Crouch
  F1000Research, 6, pp. 876, 2017
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• Software Heritage: Why and How to Preserve Software Source Code
  Roberto Di Cosmo, Stefano Zacchiroli
  iPRES 2017: 14^th International Conference on Digital Preservation, 2017
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• The ELIXIR-EXCELERATE Train-the-Trainer pilot programme: empower researchers to deliver high-quality training [version 1; peer review: 2 approved]
  Sarah L. Morgan, Patricia M. Palagi, Pedro L. Fernandes, Eija Koperlainen, Jure Dimec, Diana Marek, Lee Larcombe, Gabriella Rustici, Teresa K. Attwood, Allegra Via
  F1000Research, 6, pp. 1557, 2017
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• Taxonomy and metadata for wind energy Research &Development
  Sempreviva Anna Maria, Vesth Allan, Bak Christian, Verelst David Robert, Giebel Gregor, Danielsen Hilmar Kjartansson, Mikkelsen Lars Pilgaard, Andersson Mattias, Vasiljevic Nikola, Barth Stephan, Sanz Rodrigo Javier, Gancarski Pawel, Reigstad Tor Inge, Bolstad Hans Christian, Wagenaar Jan Willem, Hermans Koen W
  2017
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• Quality Assessment for the Sustainable Provision of Software Components and Digital Research Infrastructures for the Arts and Humanities
  Stefan Buddenbohm, Markus Matoni, Stefan Schmunk, Carsten Thiel
  Bibliothek Forschung und Praxis, 41(2), 2017
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• Computational Chemistry: The Fate of Current Methods and Future Challenges
  Stefan Grimme, Peter R. Schreiner
  Angewandte Chemie International Edition, 57(16), pp. 4170--4176--4170--4176, 2017
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• Building Tools to Facilitate Data Reuse
  Stefanie Kethers, Andrew Treloar, Mingfang Wu
  International Journal of Digital Curation, 11(2), pp. 1--12, 2017
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• Toward standard practices for sharing computer code and programs in neuroscience
  Stephen J. Eglen, Ben Marwick, Yaroslav O. Halchenko, Michael Hanke, Shoaib Sufi, Padraig Gleeson, R. Angus Silver, Andrew P. Davison, Linda Lanyon, Mathew Abrams, Thomas Wachtler, David J. Willshaw, Christophe Pouzat, Jean-Baptiste Poline
  Nature Neuroscience, 20(6), pp. 770--773, 2017
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• Open Badges: A Systematic Review of Peer-Reviewed Published Literature (2011-2015)
  Tharindu R. Liyanagunawardena, Sandra Scalzavara, Shirley A. Williams
  European Journal of Open, Distance and E-Learning, 20(2), pp. 1--16, 2017
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• Correction: Unmet needs for analyzing biological big data: A survey of 704 NSF principal investigators
  The PLOS Computational Biology Staff
  PLOS Computational Biology, 13(11), pp. e1005858, 2017
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• Bridging the Chasm
  Tim Storer
  ACM Computing Surveys, 50(4), pp. 1--32, 2017
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• Reproducibility in Research: Systems, Infrastructure, Culture
  Tom Crick, Benjamin A. Hall, Samin Ishtiaq
  Journal of Open Research Software, 5(1), pp. 32, 2017
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• Exploring software development at the very large-scale: a revelatory case study and research agenda for agile method adaptation
  Torgeir Dingsøyr, Nils Brede Moe, Tor Erlend Fægri, Eva Amdahl Seim
  Empirical Software Engineering, 23(1), pp. 490--520, 2017
  DOI: 10.1007/s10664-017-9524-2
• Teachers' perceptions of digital badges as recognition of professional development
  W. Monty Jones, Samantha Hope, Brianne Adams
  British Journal of Educational Technology, 49(3), pp. 427--438, 2017
  DOI: 10.1111/bjet.12557

2016

• Foundation of Digital Badges and Micro-Credentials: Demonstrating and Recognizing Knowledge and Competencies
  
  2016
  DOI: 10.1007/978-3-319-15425-1
• Identifying and Removing Gender Barriers in Open Learning Communities: The Programming Historian
  Adam Crymble
  Blended Learning in Practice(Autumn), pp. 49--60, 2016
  https://uhra.herts.ac.uk/bitstream/handle/2299/17271/Blip%5F2016%5FAutumn%5F2016%5FFinal%5FAutumn%5F2016.pdf#page=49
• Cluster failure: Why fMRI inferences for spatial extent have inflated false-positive rates
  Anders Eklund, Thomas E. Nichols, Hans Knutsson
  Proceedings of the National Academy of Sciences, 113(28), pp. 7900--7905, 2016
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• Wissenschaftliche Software Pflegen – Aber Wie?
  Andreas Zeller
  2016
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• Software citation principles
  Arfon M. Smith, Daniel S. Katz, Kyle E. Niemeyer
  PeerJ Computer Science, 2, pp. e86, 2016
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• Not everyone can use Git: Research Software Engineers recommendations for scientist-centred software support (and what researchers really think of them)
  Caroline Jay, Rawan Sanyour, Robert Haines
  Journal of open research software, pp. null--null, 2016
  https://www.research.manchester.ac.uk/portal/files/53599032/JayCaroline%5F2.pdf; https://lens.org/139-612-968-828-896
• Repeatability in computer systems research
  Christian Collberg, Todd A. Proebsting
  Communications of the ACM, 59(3), pp. 62--69, 2016
  DOI: 10.1145/2812803
• Most computational hydrology is not reproducible, so is it really science?
  Christopher Hutton, Thorsten Wagener, Jim Freer, Dawei Han, Chris Duffy, Berit Arheimer
  Water Resources Research, 52(10), pp. 7548--7555, 2016
  DOI: 10.1002/2016WR019285
• Using Metadata Actively
  Colin Bird, Simon Coles, Iris Garrelfs, Tom Griffin, Magnus Hagdorn, Graham Klyne, Mike Mineter, Cerys Willoughby
  International Journal of Digital Curation, 11(1), 2016
  DOI: 10.2218/ijdc.v11i1.412
• How Modeling Standards, Software, and Initiatives Support Reproducibility in Systems Biology and Systems Medicine
  Dagmar Waltemath, Olaf Wolkenhauer
  IEEE Transactions on Biomedical Engineering, 63(10), pp. 1999--2006, 2016
  DOI: 10/f86fsm
• Software vs. data in the context of citation
  Daniel S. Katz, Kyle E. Niemeyer, Arfon M. Smith, William L. Anderson, Carl Boettiger, Konrad Hinsen, Rob Hooft, Michael Hucka, Allen Lee, Frank Löffler, Tom Pollard, Fernando Rios
  2016
  DOI: 10/gfvpq2
• The Astropy Problem
  Demitri Muna, Michael Alexander, Alice Allen, Richard Ashley, Daniel Asmus, Ruyman Azzollini, Michele Bannister, Rachael Beaton, Andrew Benson, G. Bruce Berriman, Maciej Bilicki, Peter Boyce, Joanna Bridge, Jan Cami, Eryn Cangi, Xian Chen, Nicholas Christiny, Christopher Clark, Michelle Collins, Johan Comparat, Neil Cook, Darren Croton, Isak Delberth Davids, Éric Depagne, John Donor, Leonardo A. dos Santos, Stephanie Douglas, Alan Du, Meredith Durbin, Dawn Erb, Daniel Faes, J. G. Fernández-Trincado, Anthony Foley, Sotiria Fotopoulou, Søren Frimann, Peter Frinchaboy, Rafael Garcia-Dias, Artur Gawryszczak, Elizabeth George, Sebastian Gonzalez, Karl Gordon, Nicholas Gorgone, Catherine Gosmeyer, Katie Grasha, Perry Greenfield, Rebekka Grellmann, James Guillochon, Mark Gurwell, Marcel Haas, Alex Hagen, Daryl Haggard, Tim Haines, Patrick Hall, Wojciech Hellwing, Edmund Christian Herenz, Samuel Hinton, Renee Hlozek, John Hoffman, Derek Holman, Benne Willem Holwerda, Anthony Horton, Cameron Hummels, Daniel Jacobs, Jens Juel Jensen, David Jones, Arna Karick, Luke Kelley, Matthew Kenworthy, Ben Kitchener, Dominik Klaes, Saul Kohn, Piotr Konorski, Coleman Krawczyk, Kyler Kuehn, Teet Kuutma, Michael T. Lam, Richard Lane, Jochen Liske, Diego Lopez-Camara, Katherine Mack, Sam Mangham, Qingqing Mao, David J. E. Marsh, Cecilia Mateu, Loïc Maurin, James McCormac, Ivelina Momcheva, Hektor Monteiro, Michael Mueller, Roberto Munoz, Rohan Naidu, Nicholas Nelson, Christian Nitschelm, Chris North, Juan Nunez-Iglesias, Sara Ogaz, Russell Owen, John Parejko, Vera Patrício, Joshua Pepper, Marshall Perrin, Timothy Pickering, Jennifer Piscionere, Richard Pogge, Radek Poleski, Alkistis Pourtsidou, Adrian M. Price-Whelan, Meredith L. Rawls, Shaun Read, Glen Rees, Hanno Rein, Thomas Rice, Signe Riemer-Sørensen, Naum Rusomarov, Sebastian F. Sanchez, Miguel Santander-García, Gal Sarid, William Schoenell, Aleks Scholz, Robert L. Schuhmann, William Schuster, Peter Scicluna, Marja Seidel, Lijing Shao, Pranav Sharma, Aleksandar Shulevski, David Shupe, Cristóbal Sifón, Brooke Simmons, Manodeep Sinha, Ian Skillen, Bjoern Soergel, Thomas Spriggs, Sundar Srinivasan, Abigail Stevens, Ole Streicher, Eric Suchyta, Joshua Tan, O. Grace Telford, Romain Thomas, Chiara Tonini, Grant Tremblay, Sarah Tuttle, Tanya Urrutia, Sam Vaughan, Miguel Verdugo, Alexander Wagner, Josh Walawender, Andrew Wetzel, Kyle Willett, Peter K. G. Williams, Guang Yang, Guangtun Zhu, Andrea Zonca
  2016
  http://arxiv.org/abs/1610.03159v1
• The Pathways of Research Software Preservation: An Educational and Planning Resource for Service Development
  Fernando Rios
  D-Lib Magazine, 22(7/8), 2016
  DOI: 10/gfvpq9
• Brain scans are prone to false positives, study says
  Greg Miller
  Science, 353(6296), pp. 208--209, 2016
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• Top 10 metrics for life science software good practices
  Haydee Artaza, Neil Chue Hong, Manuel Corpas, Angel Corpuz, Rob W. W. Hooft, Rafael C. Jiménez, Brane Leskošek, Brett G. Olivier, Jan Stourac, Radka Svobodová Vařeková, Thomas Van Parys, Daniel Vaughan
  F1000Research, 5, pp. 2000, 2016
  DOI: 10.12688/f1000research.9206.1
• Archiving Software Surrogates on the Web for Future Reference
  Helge Holzmann, Wolfram Sperber, Mila Runnwerth
  Research and Advanced Technology for Digital Libraries, pp. 215--226, 2016
  DOI: 10.1007/978-3-319-43997-6_17
• An empirical study of practitioners' perspectives on green software engineering
  Irene Manotas, Christian Bird, Rui Zhang, David Shepherd, Ciera Jaspan, Caitlin Sadowski, Lori Pollock, James Clause
  Proceedings of the 2016 IEEE/ACM 38^th International Conference on Software Engineering (ICSE 2016), 2016
  DOI: 10.1145/2884781.2884810
• Library Carpentry: Software Skills Training for Library Professionals
  James Baker, Caitlin Moore, Ernesto Priego, Raquel Alegre, Jez Cope, Ludi Price, Owen Stephens, Daniel van Strien, Greg Wilson
  Liber Quarterly, 26(3), pp. 141--162, 2016
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• Digital Badges for Professional Development: Teachers' Perceptions of the Value of a New Credentialing Currency
  James Diamond, Pilar Carmina Gonzalez
  Foundation of Digital Badges and Micro-Credentials, pp. 391--409, 2016
  DOI: 10.1007/978-3-319-15425-1_21
• Re-identification attacks--A systematic literature review
  Jane Henriksen-Bulmer, Sheridan Jeary
  International Journal of Information Management, 36(6, Part B), pp. 1184--1192, 2016
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• Development of a cloud-based Bioinformatics Training Platform
  Jerico Revote, Nathan S. Watson-Haigh, Steve Quenette, Blair Bethwaite, Annette McGrath, Catherine A. Shang
  Briefings in Bioinformatics, pp. bbw032, 2016
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• Wege Aus Der In-Silico-Reproduzierbarkeitskrise
  Johannes Köster
  2016
  DOI: 10.5281/zenodo.168388
• The Challenge and Promise of Software Citation for Credit, Identification, Discovery, and Reuse
  Kyle E. Niemeyer, Arfon M. Smith, Daniel S. Katz
  Journal of Data and Information Quality, 7(4), pp. 1--5, 2016
  DOI: 10/gc5sjd
• The FAIR Guiding Principles for scientific data management and stewardship
  Mark D. Wilkinson, Michel Dumontier, IJsbrand Jan Aalbersberg, Gabrielle Appleton, Myles Axton, Arie Baak, Niklas Blomberg, Jan-Willem Boiten, Luiz Bonino da Silva Santos, Philip E. Bourne, Jildau Bouwman, Anthony J. Brookes, Tim Clark, Mercè Crosas, Ingrid Dillo, Olivier Dumon, Scott Edmunds, Chris T. Evelo, Richard Finkers, Alejandra Gonzalez-Beltran, Alasdair J. G. Gray, Paul Groth, Carole Goble, Jeffrey S. Grethe, Jaap Heringa, Peter A. C. 't Hoen, Rob Hooft, Tobias Kuhn, Ruben Kok, Joost Kok, Scott J. Lusher, Maryann E. Martone, Albert Mons, Abel L. Packer, Bengt Persson, Philippe Rocca-Serra, Marco Roos, Rene van Schaik, Susanna-Assunta Sansone, Erik Schultes, Thierry Sengstag, Ted Slater, George Strawn, Morris A. Swertz, Mark Thompson, Johan van der Lei, Erik van Mulligen, Jan Velterop, Andra Waagmeester, Peter Wittenburg, Katherine Wolstencroft, Jun Zhao, Barend Mons
  Scientific Data, 3(1), pp. 1--9, 2016
  DOI: 10.1038/sdata.2016.18
• Nachhaltigkeit Von Forschungssoftware
  Matthias Katerbow
  2016
  DOI: 10.5281/zenodo.168387
• Software search is not a science, even among scientists: A survey of how scientists and engineers find software
  Michael Hucka, Matthew J. Graham
  Journal of Systems and Software, 141:171-191, 2018, 2016
  DOI: 10/ggc6j4
• Walking the Talk: Adopting and Adapting Sustainable Scientific Software Development processes in a Small Biology Lab
  Michael R. Crusoe, C. Titus Brown
  Journal of Open Research Software, 4(1), pp. e44, 2016
  DOI: 10.5334/jors.35
• Continuing Education Workshops in Bioinformatics Positively Impact Research and Careers
  Michelle D. Brazas, B. F. Francis Ouellette
  PLOS Computational Biology, 12(6), pp. e1004916, 2016
  DOI: 10.1371/journal.pcbi.1004916
• Digital badges – rewards for learning?
  Rebecca Shields, Ritesh Chugh
  Education and Information Technologies, 22(4), pp. 1817--1824, 2016
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• Building Better Digital Badges
  Rudy McDaniel, Joseph Fanfarelli
  Simulation & Gaming, 47(1), pp. 73--102, 2016
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• Building Collective Belief in Badges: Designing Trust Networks
  Sheryl Grant
  Foundation of Digital Badges and Micro-Credentials, pp. 97--114, 2016
  DOI: 10.1007/978-3-319-15425-1_6
• Qualitätsmanagement Von Und Infrastruktur Für Open Source Software In Der Wissenschaft Am Beispiel Des Medical Imaging Interaction Toolkits (Mitk)
  Stefan Kislinskiy, Caspar Goch
  2016
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• Entwurf Eines Metadatenrepositoriums Zur Erfassung Technischer Nachhaltigkeit Von Forschungssoftware
  Stephan Druskat
  2016
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• Research integrity: Dont let transparency damage science
  Stephan Lewandowsky, Dorothy Bishop
  Nature, 529(7587), pp. 459--461, 2016
  DOI: 10/ggc6j5
• Reproduzierbarkeit Und Open Science: Bestandteile Und Erste Erfahrungswerte - Mit Besonderem Augenmerk Auf Software
  Sünje Dallmeier-Tiessen
  2016
  DOI: 10.5281/zenodo.168384
• Regulation (EU) 2016/679 of the European Parliament and of the Council of 27 April 2016 on the protection of natural persons with regard to the processing of personal data and on the free movement of such data, and repealing Directive 95/46/EC (General Data Protection Regulation)
  The European Parliament, the Council of the European Union
  Official Journal of the European Union, 59(L 119), 2016
  https://eur-lex.europa.eu/eli/reg/2016/679/2016-05-04
• Employer Perceptions of Critical Information Literacy Skills and Digital Badges
  Victoria Raish, Emily Rimland
  College & Research Libraries, 77(1), pp. 87--113, 2016
  DOI: 10.5860/crl.77.1.87
• Disciplinary differences of software use and impact in scientific literature
  Xuelian Pan, Erjia Yan, Weina Hua
  Scientometrics, 109(3), pp. 1593--1610, 2016
  DOI: 10/f9fp4p

2015

• Reviewing computational methods
  
  Nature Methods, 12(12), pp. 1099--1099, 2015
  DOI: 10/ggc6j2
• Digital badges in undergraduate composition courses: effects on intrinsic motivation
  Alan J. Reid, Denise Paster, Samuel Abramovich
  Journal of Computers in Education, 2(4), pp. 377--398, 2015
  DOI: 10.1007/s40692-015-0042-1
• Beyond authorship: attribution, contribution, collaboration, and credit
  Amy Brand, Liz Allen, Micah Altman, Marjorie Hlava, Jo Scott
  Learned Publishing, 28(2), pp. 151--155, 2015
  DOI: 10.1087/20150211
• Fostering Engagement with Gamification: Review of Current Practices on Online Learning Platforms
  Anna Hansch, Christopher Newman, Thomas Schildhauer
  SSRN Electronic Journal, 2015
  DOI: 10.2139/ssrn.2694736
• Computing Workflows for Biologists: A Roadmap
  Ashley Shade, Tracy K. Teal
  PLOS Biology, 13(11), pp. e1002303, 2015
  DOI: 10.1371/journal.pbio.1002303
• Promoting an open research culture
  B. A. Nosek, G. Alter, G. C. Banks, D. Borsboom, S. D. Bowman, S. J. Breckler, S. Buck, C. D. Chambers, G. Chin, G. Christensen, M. Contestabile, A. Dafoe, E. Eich, J. Freese, R. Glennerster, D. Goroff, D. P. Green, B. Hesse, M. Humphreys, J. Ishiyama, D. Karlan, A. Kraut, A. Lupia, P. Mabry, T. Madon, N. Malhotra, E. Mayo-Wilson, M. McNutt, E. Miguel, E. L. Paluck, U. Simonsohn, C. Soderberg, B. A. Spellman, J. Turitto, G. VandenBos, S. Vazire, E. J. Wagenmakers, R. Wilson, T. Yarkoni
  Science, 348(6242), pp. 1422--1425, 2015
  DOI: 10/gcpzwn
• Developing reproducible and reusable methods through research software engineering
  Caroline Jay, Robert Haines
  2015
  https://www.research.manchester.ac.uk/portal/en/publications/developing-reproducible-and-reusable-methods-through-research-software-engineering(ea424bf9-1256-4738-bc62-cd3e985e001a).html
• Claims about the use of software engineering practices in science: A systematic literature review
  Dustin Heaton, Jeffrey C. Carver
  Information and Software Technology, 67, pp. 207--219--207--219, 2015
  DOI: 10/f7tmz6
• The Oracle Problem in Software Testing: A Survey
  Earl T. Barr, Mark Harman, Phil McMinn, Muzammil Shahbaz, Shin Yoo
  IEEE Transactions on Software Engineering, 41(5), pp. 507--525, 2015
  DOI: 10.1109/tse.2014.2372785
• NIBLSE: A Network for Integrating Bioinformatics into Life Sciences Education
  Elizabeth Dinsdale, Sarah C. R. Elgin, Neal Grandgenett, William Morgan, Anne Rosenwald, William Tapprich, Eric W. Triplett, Mark A. Pauley
  CBE--Life Sciences Education, 14(4), pp. le3, 2015
  DOI: 10.1187/cbe.15-06-0123
• How Do Users Discover New Tools in Software Development and Beyond?
  Emerson Murphy-Hill, Da Young Lee, Gail C. Murphy, Joanna McGrenere
  Computer Supported Cooperative Work (CSCW), 24(5), pp. 389--422, 2015
  DOI: 10/ggnd4g
• Digital Badges: Beyond Learning Incentives
  Emily Josephine Hurst
  Journal of Electronic Resources in Medical Libraries, 12(3), pp. 182--189, 2015
  DOI: 10.1080/15424065.2015.1065661
• Rule rewrite aims to clean up scientific software
  Erika Check Hayden
  Nature, 520(7547), pp. 276--277, 2015
  DOI: 10/3n4
• A systematic literature review on the barriers faced by newcomers to open source software projects
  Igor Steinmacher, Marco Aurelio Graciotto Silva, Marco Aurelio Gerosa, David F. Redmiles
  Information and Software Technology, 59, pp. 67--85, 2015
  DOI: 10/f6z643
• Software in the scientific literature: Problems with seeing, finding, and using software mentioned in the biology literature
  James Howison, Julia Bullard
  Journal of the Association for Information Science and Technology, 67(9), pp. 2137--2155, 2015
  DOI: 10/f87339
• Understanding the scientific software ecosystem and its impact: Current and future measures
  James Howison, Ewa Deelman, Michael J. McLennan, Rafael Ferreira da Silva, James D. Herbsleb
  Research Evaluation, 24(4), pp. 454--470, 2015
  DOI: 10/f72tnc
• Opinion: Reproducible research can still be wrong: Adopting a prevention approach: Fig. 1.
  Jeffrey T. Leek, Roger D. Peng
  Proceedings of the National Academy of Sciences, 112(6), pp. 1645--1646, 2015
  DOI: 10/gc4h7f
• Understanding digital badges through feedback, reward, and narrative
  Joseph Fanfarelli, Stephanie Vie, Rudy McDaniel
  Communication Design Quarterly, 3(3), pp. 56--60, 2015
  DOI: 10.1145/2792989.2792998
• Using a suite of ontologies for preserving workflow-centric research objects
  Khalid Belhajjame, Jun Zhao, Daniel Garijo, Matthew Gamble, Kristina Hettne, Raul Palma, Eleni Mina, Oscar Corcho, José Manuel Gómez-Pérez, Sean Bechhofer, Graham Klyne, Carole Goble
  Journal of Web Semantics, 32, pp. 16--42, 2015
  DOI: 10.1016/j.websem.2015.01.003
• Micro-Credentials, Nano Degrees, and Digital Badges
  Pamela A. Lemoine, Michael D. Richardson
  International Journal of Technology and Educational Marketing, 5(1), pp. 36--49, 2015
  DOI: 10.4018/ijtem.2015010104
• Life after MOOCs
  Phillip Compeau, Pavel A. Pevzner
  Communications of the ACM, 58(10), pp. 41--44, 2015
  DOI: 10.1145/2686871
• Git and GitHub for Librarians
  Robin Camille Davis
  Behavioral & Social Sciences Librarian, 34(3), pp. 158--164, 2015
  DOI: 10/gf5tgq
• Using Mozilla badges to certify XSEDE users and promote training
  Sandra Kappes, Vincent C. Betro
  Proceedings of the 2015 XSEDE Conference on Scientific Advancements Enabled by Enhanced Cyberinfrastructure - XSEDE '15, 2015
  DOI: 10.1145/2792745.2792759
• Correction: GOBLET: The Global Organisation for Bioinformatics Learning, Education and Training
  Teresa K. Attwood, Erik Bongcam-Rudloff, Michelle E. Brazas, Manuel Corpas, Pascale Gaudet, Fran Lewitter, Nicola Mulder, Patricia M. Palagi, Maria Victoria Schneider, Celia W. G. van Gelder, GOBLET Consortium
  PLOS Computational Biology, 11(5), pp. e1004281, 2015
  DOI: 10.1371/journal.pcbi.1004281
• GOBLET: The Global Organisation for Bioinformatics Learning, Education and Training
  Teresa K. Atwood, Erik Bongcam-Rudloff, Michelle E. Brazas, Manuel Corpas, Pascale Gaudet, Fran Lewitter, Nicola Mulder, Patricia M. Palagi, Maria Victoria Schneider, Celia W. G. van Gelder, GOBLET Consortium
  PLOS Computational Biology, 11(4), pp. e1004143, 2015
  DOI: 10.1371/journal.pcbi.1004143
• Reproducibility in Research: Systems, Infrastructure, Culture
  Tom Crick, Benjamin A. Hall, Samin Ishtiaq
  2015
• Data Carpentry: Workshops to Increase Data Literacy for Researchers
  Tracy K. Teal, Karen A. Cranston, Hilmar Lapp, Ethan White, Greg Wilson, Karthik Ram, Aleksandra Pawlik
  International Journal of Digital Curation, 10(1), pp. 135--143, 2015
  DOI: 10.2218/ijdc.v10i1.351

2014

• Code share
  
  Nature, 514(7524), pp. 536--536, 2014
  DOI: 10/wsm
• A Survey of Scholarly Literature Describing the Field of Bioinformatics Education and Bioinformatics Educational Research
  Alejandra J. Magana, Manaz Taleyarkhan, Daniela Rivera Alvarado, Michael Kane, John Springer, Kari Clase
  CBE--Life Sciences Education, 13(4), pp. 607--623, 2014
  DOI: 10.1187/cbe.13-10-0193
• Better Software, Better Research
  Carole Goble
  IEEE Internet Computing, 18(5), pp. 4--8, 2014
  DOI: 10.1109/MIC.2014.88
• On best practices in the development of bioinformatics software
  Felipe da Veiga Leprevost, Valmir C. Barbosa, Eduardo L. Francisco, Yasset Perez-Riverol, Paulo C. Carvalho
  Frontiers in Genetics, 5, 2014
  DOI: 10.3389/fgene.2014.00199
• Best Practices for Scientific Computing
  Greg Wilson, D. A. Aruliah, C. Titus Brown, Neil P. Chue Hong, Matt Davis, Richard T. Guy, Steven H. D. Haddock, Kathryn D. Huff, Ian M. Mitchell, Mark D. Plumbley, Ben Waugh, Ethan P. White, Paul Wilson
  PLoS Biology, 12(1), pp. e1001745, 2014
  DOI: 10/qtt
• Open badges for education: what are the implications at the intersection of open systems and badging?
  June Ahn, Anthony Pellicone, Brian S. Butler
  Research in Learning Technology, 22, 2014
  DOI: 10.3402/rlt.v22.23563
• Managing the Computational Chemistry Big Data Problem: The ioChem-BD Platform
  M. Álvarez-Moreno, C. de Graaf, N. López, F. Maseras, J. M. Poblet, C. Bo
  Journal of Chemical Information and Modeling, 55(1), pp. 95--103--95--103, 2014
  DOI: 10.1021/ci500593j
• Design Principles for Digital Badge Systems
  Nate Otto, Daniel T. Hickey
  New Horizons in Web Based Learning, 8699, pp. 179--184, 2014
  DOI: 10.1007/978-3-319-13296-9_20
• Minimal information for reusable scientific software
  Neil Chue Hong
  2^nd Workshop on Sustainable Software for Science: Practice and Experiences (WSSSPE2), 2014
  DOI: 10.6084/m9.figshare.1112528
• ROHub -- A Digital Library of Research Objects Supporting Scientists Towards Reproducible Science
  Raúl Palma, Piotr Hołubowicz, Oscar Corcho, José Manuel Gómez-Pérez, Cezary Mazurek
  Semantic Web Evaluation Challenge, 475, pp. 77--82, 2014
  DOI: 10.1007/978-3-319-12024-9_9
• Reproducible research is still a challenge
  Rich FitzJohn, Matt Pennell, Amy Zanne, Will Cornwell
  2014
  https://ropensci.org/blog/2014/06/09/reproducibility/
• Social influences on secure development tool adoption: why security tools spread
  Shundan Xiao, Jim Witschey, Emerson Murphy-Hill
  , pp. 1095--1106, 2014
  DOI: 10/ggnd4j
• Supporting Self-regulated Learning Through Digital Badges: A Case Study
  Stefania Cucchiara, Alessandra Giglio, Donatella Persico, Juliana E. Raffaghelli
  New Horizons in Web Based Learning, 8699, pp. 133--142, 2014
  DOI: 10.1007/978-3-319-13296-9_15
• Best Practices for Computational Science: Software Infrastructure and Environments for Reproducible and Extensible Research
  Victoria Stodden, Sheila Miguez
  Journal of Open Research Software, 2(1), pp. e21, 2014
  DOI: 10.5334/jors.ay

2013

• Collaboration gets the most out of software
  Andrew Morin, Ben Eisenbraun, Jason Key, Paul C. Sanschagrin, Michael A. Timony, Michelle Ottaviano, Piotr Sliz
  eLife, 2, 2013
  DOI: 10/ggc6j7
• Ten simple rules for reproducible computational research
  Geir Kjetil Sandve, Anton Nekrutenko, James Taylor, Eivind Hovig
  PLOS Computational Biology, 9(10), pp. 1--4, 2013
  DOI: 10.1371/journal.pcbi.1003285
• Why do newcomers abandon open source software projects?
  Igor Steinmacher, Igor Wiese, Ana Paula Chaves, Marco Aurelio Gerosa
  Proceedings of the 6^th International Workshop on Cooperative and Human Aspects of Software Engineering (CHASE), 2013
  DOI: 10.1109/chase.2013.6614728
• Benefits of open source code
  James A. J. Wilson
  2013
  http://oss-watch.ac.uk/resources/whoneedssource
• Comet: An open-source MS/MS sequence database search tool
  Jimmy K. Eng, Tahmina A. Jahan, Michael R. Hoopmann
  Proteomics, 13(1), pp. 22--24, 2013
  DOI: 10.1002/pmic.201200439
• Git can facilitate greater reproducibility and increased transparency in science
  Karthik Ram
  Source Code for Biology and Medicine, 8(1), pp. 7, 2013
  DOI: 10/krv
• Troubling Trends in Scientific Software Use
  L. N. Joppa, G. McInerny, R. Harper, L. Salido, K. Takeda, K. OHara, D. Gavaghan, S. Emmott
  Science, 340(6134), pp. 814--815, 2013
  DOI: 10/mk7
• Practices in source code sharing in astrophysics
  Lior Shamir, John F. Wallin, Alice Allen, Bruce Berriman, Peter Teuben, Robert J. Nemiroff, Jessica Mink, Robert J. Hanisch, Kimberly DuPrie
  Astronomy and Computing, 1, pp. 54--58, 2013
  DOI: 10/gc5sjk
• A Competency Framework Implementation for International Public in the Information, Communication and Technology
  Lut-Ochir Vanganjil, Buyandelger Banzragch, Zolzaya Adiyasuren, Nyamsuren Boloo
  Embedded Selforganising Systems, 10(Special Issue – Proceedings of the International Symposium on Computer Science and Educational Technologies 2023), pp. 23--27, 2013
  https://www.bibliothek.tu-chemnitz.de/ojs/index.php/cs/article/view/606
• Current issues and research trends on open-source software communities
  M. R. Martinez-Torres, M. C. Diaz-Fernandez
  Technology Analysis & Strategic Management, 26(1), pp. 55--68, 2013
  DOI: 10/gc5sjj
• The Many Faces of a Software Engineer in a Research Community
  Maria C. Marinovici, Harold Kirkham
  2013
  http://www.uploads.pnsqc.org/2013/papers/t-033%5FMarinovici%5Fpaper.pdf; https://lens.org/122-334-582-872-953
• Navigating the changing learning landscape: perspective from bioinformatics.ca
  Michelle D. Brazas, B. F. Francis Ouellette
  Briefings in Bioinformatics, 14(5), pp. 556--562, 2013
  DOI: 10.1093/bib/bbt016
• Just Imagine: New Paradigms for Medical Education
  Neil B. Mehta, Alan L. Hull, James B. Young, James K. Stoller
  Academic Medicine, 88(10), pp. 1418--1423, 2013
  DOI: 10.1097/acm.0b013e3182a36a07
• Software Papers: improving the reusability and sustainability of scientific software
  Neil Chue Hong, Brian Hole, Samuel Moore
  1^st Workshop on Sustainable Software for Science: Practice and Experiences (WSSSPE1), 2013
  DOI: 10.6084/m9.figshare.795303
• Some Results of the Study on Determining Digital Competence Needs of Citizens
  Sanjaabadam Sed, Munkhmagnai Altangerel
  Embedded Selforganising Systems, 10(Special Issue – Proceedings of the International Symposium on Computer Science and Educational Technologies 2023), pp. 48--54, 2013
  https://www.bibliothek.tu-chemnitz.de/ojs/index.php/cs/article/view/606
• The Software Sustainability Institute: Changing Research Software Attitudes and Practices
  Stephen Crouch, Neil Chue Hong, Simon Hettrick, Mike Jackson, Aleksandra Pawlik, Shoaib Sufi, Les Carr, David De Roure, Carole Goble, Mark Parsons
  Computing in Science & Engineering, 15(6), pp. 74--80, 2013
  DOI: 10.1109/mcse.2013.133
• What makes computational open source software libraries successful?
  Wolfgang Bangerth, Timo Heister
  Computational Science & Discovery, 6(1), pp. 015010--015010, 2013
  DOI: 10/gf5hm4

2012

• Shining Light into Black Boxes
  A. Morin, J. Urban, P. D. Adams, I. Foster, A. Sali, D. Baker, P. Sliz
  Science, 336(6078), pp. 159--160, 2012
  DOI: 10/m5t
• A Genealogy of Badges: Inherited meaning and monstrous moral hybrids
  Alexander M.C. Halavais
  Information, Communication & Society, 15(3), pp. 354--373, 2012
  DOI: 10.1080/1369118x.2011.641992
• Ten Simple Rules for the Open Development of Scientific Software
  Andreas Prlić, James B. Procter
  PLoS Computational Biology, 8(12), pp. e1002802, 2012
  DOI: 10.1371/journal.pcbi.1002802
• A Quick Guide to Software Licensing for the Scientist-Programmer
  Andrew Morin, Jennifer Urban, Piotr Sliz
  PLoS Computational Biology, 8(7), pp. e1002598--e1002598, 2012
  DOI: 10/b5hp
• AMIA Board white paper: definition of biomedical informatics and specification of core competencies for graduate education in the discipline
  Casimir A. Kulikowski, Edward H. Shortliffe, Leanne M. Currie, Peter L. Elkin, Lawrence E. Hunter, Todd R. Johnson, Ira J. Kalet, Leslie A. Lenert, Mark A. Musen, Judy G. Ozbolt, Jack W. Smith, Peter Z. Tarczy-Hornoch, Jeffrey J. Williamson
  Journal of the American Medical Informatics Association, 19(6), pp. 931--938, 2012
  DOI: 10.1136/amiajnl-2012-001053
• The case for open computer programs
  Darrel C. Ince, Leslie Hatton, John Graham-Cumming
  Nature, 482(7386), pp. 485--488, 2012
  DOI: 10/hqg
• Is the replicability crisis overblown? Three arguments examined
  Harold Pashler, Christine R. Harris
  Perspectives on Psychological Science, 7(6), pp. 531--536, 2012
  DOI: 10.1177/1745691612463401
• Doing science properly in the digital age
  Neil Chue Hong
  Digital Research 2012, 2012
  https://web.archive.org/web/20130802135655/http://digital-research-2012.oerc.ox.ac.uk/papers/doing-science-properly-in-the-digital-age/view
• The Research Software Engineer
  Rob Baxter, Neil Chue Hong, Dirk Gorissen, James Hetherington, Ilian Todorov
  Digital Research 2012, 2012
  https://web.archive.org/web/20180202071627/http://digital-research-2012.oerc.ox.ac.uk/papers/the-research-software-engineer/view

2011

• Some future software engineering opportunities and challenges
  Barry Boehm
  The future of software engineering, pp. 1--32, 2011
  DOI: 10.1007/978-3-642-15187-3_1
• Ten Simple Rules for Teaching Bioinformatics at the High School Level
  David Form, Fran Lewitter
  PLoS Computational Biology, 7(10), pp. e1002243, 2011
  DOI: 10.1371/journal.pcbi.1002243
• Scientific software production: incentives and collaboration
  James Howison, James D. Herbsleb
  Proceedings of the ACM 2011 Conference on Computer Supported Cooperative Work (CSCW '11), pp. 513--522, 2011
  DOI: 10.1145/1958824.1958904
• A Journal for the Astronomical Computing Community?
  Norman Gray, Robert G. Mann
  2011
  http://arxiv.org/abs/1103.1982v1
• Reproducible Research in Computational Science
  R. D. Peng
  Science, 334(6060), pp. 1226--1227, 2011
  DOI: 10/fdv356
• Search, adapt, and reuse: the future of scientific workflows
  Sarah Cohen-Boulakia, Ulf Leser
  ACM SIGMOD Record, 40(2), pp. 6--16, 2011
  DOI: 10.1145/2034863.2034865

2010

• A Framework for Software Preservation
  Brian Matthews, Arif Shaon, Juan Bicarregui, Catherine Jones
  International Journal of Digital Curation, 5(1), pp. 91--105, 2010
  DOI: 10/fxqrbb
• Better, faster, and cheaper: what is better software?
  Burak Turhan, Çetin Meriçli, Tekin Meriçli
  2010
  DOI: 10.1145/1868328.1868345
• Semantic search of tools for collaborative learning with the Ontoolsearch system
  Guillermo Vega-Gorgojo, Miguel L. Bote-Lorenzo, Juan I. Asensio-Pérez, Eduardo Gómez-Sánchez, Yannis A. Dimitriadis, Iván M. Jorrı\ʼn-Abellán
  Computers & Education, 54(4), pp. 835--848, 2010
  DOI: 10/dkzc3p
• Managing Ubiquitous Scientific Knowledge on Semantic Web
  Hao Xu
  Advances in Computer Science and Information Technology, pp. 421--430, 2010
  DOI: 10.1007/978-3-642-13577-4_37
• A Survey of Scientific Software Development
  Luke Nguyen-Hoan, Shayne Flint, Ramesh Sankaranarayana
  Proceedings of the 2010 ACM-IEEE International Symposium on Empirical Software Engineering and Measurement, pp. 12:1--12:10, 2010
  DOI: 10/brfqvq
• Making Access to Astronomical Software More Efficient
  P. Grosbol, D. Tody
  2010
  http://arxiv.org/abs/1004.4430v1
• Research Objects: Towards Exchange and Reuse of Digital Knowledge
  Sean Bechhofer, David De Roure, Matthew Gamble, Carole Goble, Iain Buchan
  Nature Precedings, 2010
  DOI: 10.1038/npre.2010.4626.1
• Computational science: ...Error
  Zeeya Merali
  Nature, 467(7317), pp. 775--777, 2010
  DOI: 10/b4k9jt

2009

• Astronomical Software Wants To Be Free: A Manifesto
  Benjamin J. Weiner, Michael R. Blanton, Alison L. Coil, Michael C. Cooper, Romeel Davé, David W. Hogg, Bradford P. Holden, Patrik Jonsson, Susan A. Kassin, Jennifer M. Lotz, John Moustakas, Jeffrey A. Newman, J. X. Prochaska, Peter J. Teuben, Christy A. Tremonti, Christopher N. A. Willmer
  2009
  http://arxiv.org/abs/0903.3971v1
• Program Requirements for Fellowship Education in the Subspecialty of Clinical Informatics
  Charles Safran, M. Michael Shabot, Benson S. Munger, John H. Holmes, Elaine B. Steen, John R. Lumpkin, Don E. Detmer, AMIA Board of Directors
  Journal of the American Medical Informatics Association, 16(2), pp. 158--166, 2009
  DOI: 10.1197/jamia.m3046
• The design and realisation of the Virtual Research Environment for social sharing of workflows
  David De Roure, Carole Goble, Robert Stevens
  Future Generation Computer Systems, 25(5), pp. 561--567, 2009
  DOI: 10.1016/j.future.2008.06.010
• Defining the Medical Subspecialty of Clinical Informatics
  Don E. Detmer, John R. Lumpkin, Jeffrey J. Williamson
  Journal of the American Medical Informatics Association, 16(2), pp. 167--168, 2009
  DOI: 10.1197/jamia.m3094
• How do scientists develop and use scientific software?
  Jo Erskine Hannay, Carolyn MacLeod, Janice Singer, Hans Petter Langtangen, Dietmar Pfahl, Greg Wilson
  Proceedings of the 2009 ICSE Workshop on Software Engineering for Computational Science and Engineering, 2009
  DOI: 10.1109/secse.2009.5069155
• Software Development Cultures and Cooperation Problems: A Field Study of the Early Stages of Development of Software for a Scientific Community
  Judith Segal
  Computer Supported Cooperative Work (CSCW), 18(5), pp. 581--606, 2009
  DOI: 10.1007/s10606-009-9096-9
• Some challenges facing software engineers developing software for scientists
  Judith Segal
  Proceedings of the 2009 ICSE Workshop on Software Engineering for Computational Science and Engineering, 2009
  DOI: 10.1109/secse.2009.5069156
• CommunityCommands: command recommendations for software applications
  Justin Matejka, Wei Li, Tovi Grossman, George Fitzmaurice
  , pp. 193--202, 2009
  DOI: 10/fc4b26
• Talking Amongst Ourselves - Communication in the Astronomical Software Community
  Keith Shortridge
  2009
  http://arxiv.org/abs/0902.0255v1
• Astroinformatics: A 21ˢᵗ Century Approach to Astronomy
  Kirk D. Borne
  2009
  http://arxiv.org/abs/0909.3892v1
• Computing Has Changed Biology--Biology Education Must Catch Up
  Pavel Pevzner, Ron Shamir
  Science, 325(5940), pp. 541--542, 2009
  DOI: 10.1126/science.1173876
• Core Content for the Subspecialty of Clinical Informatics
  Reed M. Gardner, J. Marc Overhage, Elaine B. Steen, Benson S. Munger, John H. Holmes, Jeffrey J. Williamson, Don E. Detmer, AMIA Board of Directors
  Journal of the American Medical Informatics Association, 16(2), pp. 153--157, 2009
  DOI: 10.1197/jamia.m3045
• The philosophy of simulation: hot new issues or same old stew?
  Roman Frigg, Julian Reiss
  Synthese, 169(3), pp. 593--613, 2009
  DOI: 10.1007/s11229-008-9438-z
• A proposed minimum skill set for university graduates to meet the informatics needs and challenges of the ``-omics'' era
  Tin Wee Tan, Shen Jean Lim, Asif M. Khan, Shoba Ranganathan
  BMC Genomics, 10(Suppl 3), pp. S36, 2009
  DOI: 10.1186/1471-2164-10-s3-s36
• Preparing scientists for scalable software development
  Valerie Maxville
  Proceedings of the 2009 ICSE Workshop on Software Engineering for Computational Science and Engineering, 2009
  DOI: 10.1109/secse.2009.5069166
• Cognitive and learning sciences in biomedical and health instructional design: A review with lessons for biomedical informatics education
  Vimla L. Patel, Nicole A. Yoskowitz, Jose F. Arocha, Edward H. Shortliffe
  Journal of Biomedical Informatics, 42(1), pp. 176--197, 2009
  DOI: 10.1016/j.jbi.2008.12.002

2008

• The intertwining of ethics and methodology in science and engineering: a virtue-ethical approach
  Luca Consoli
  Interdisciplinary Science Reviews, 33(3), pp. 234--243, 2008
  DOI: 10.1179/174327908X366923

2007

• Recycling workflows and services through discovery and reuse
  Chris Wroe, Carole Goble, Antoon Goderis, Phillip Lord, Simon Miles, Juri Papay, Pinar Alper, Luc Moreau
  Concurrency and Computation: Practice and Experience, 19(2), pp. 181--194, 2007
  DOI: 10.1002/cpe.1050
• Sharing Detailed Research Data Is Associated with Increased Citation Rate
  Heather A. Piwowar, Roger S. Day, Douglas B. Fridsma
  PLoS ONE, 2(3), pp. e308, 2007
  DOI: 10.1371/journal.pone.0000308
• Libre Software for Research
  Israel Herraiz-Tabernero, Juan-Jose Amor-Iglesias, Alvaro del Castillo-San Felix
  The European Journal for the Informatics Professional, 9(6), 2007
  http://www.herraiz.org/papers/english/upg8-6Herraiz-2.pdf; https://lens.org/058-536-397-671-136
• Some problems of professional end user developers
  Judith Segal
  IEEE Symposium on Visual Languages and Human-Centric Computing (VL/HCC 2007), pp. 111--118, 2007
  DOI: 10.1109/VLHCC.2007.17
• Let's Go to the Whiteboard: How and Why Software Developers Use Drawings
  Mauro Cherubini, Gina Venolia, Rob DeLine, Amy J. Ko
  Proceedings of the SIGCHI Conference on Human Factors in Computing Systems, 2007
  DOI: 10.1145/1240624.1240714

2006

• A scientist's nightmare: software problem leads to five retractions
  Greg Miller
  Science, 314(5807), pp. 1856--1857, 2006
  DOI: 10.1126/science.314.5807.1856
• Where's the real bottleneck in scientific computing?
  Gregory V. Wilson
  American Scientist, 94(1), pp. 5--5, 2006
  https://www.jstor.org/stable/27858697
• Ontoolcole: An Ontology for the Semantic Search of CSCL Services
  Guillermo Vega-Gorgojo, Miguel L. Bote-Lorenzo, Eduardo Gómez-Sánchez, Juan I. Asensio-Pérez, Yannis A. Dimitriadis, Iván M. Jorrı\ʼn-Abellán
  Groupware: Design, Implementation, and Use, pp. 310--325, 2006
  DOI: 10.1007/11853862_25
• Walking the tightrope: the balancing acts of a large e-Research project
  Katherine A. Lawrence
  Computer Supported Cooperative Work, 15(4), pp. 385--411, 2006
  DOI: 10.1007/s10606-006-9025-0
• Scientific software development is not an oxymoron
  Susan M. Baxter, Steven W. Day, Jacquelyn S. Fetrow, Stephanie J. Reisinger
  PLoS Computational Biology, 2(9), pp. e87, 2006
  DOI: 10.1371/journal.pcbi.0020087

2005

• Bioinformatics: Current practice and future challenges for life science education
  Catherine Hack, Gary Kendall
  Biochemistry and Molecular Biology Education, 33(2), pp. 82--85, 2005
  DOI: 10.1002/bmb.2005.494033022424
• When software engineers met research scientists: a case study
  Judith Segal
  Empirical Software Engineering, 10(4), pp. 517--536, 2005
  DOI: 10.1007/s10664-005-3865-y
• Over the shoulder learning: supporting brief informal learning
  Michael B. Twidale
  Computer supported cooperative work (CSCW), 14(6), pp. 505--547, 2005
  DOI: 10/bcpdqn

2004

• Extending Ourselves: Computational Science, Empiricism, and Scientific Method
  Paul Humphreys
  2004
  DOI: 10.1093/0195158709.001.0001
• Software engineering and the academy: uncomfortable bedfellows?
  Tony Clear
  ACM SIGCSE Bulletin, 36(2), pp. 14--14, 2004
  DOI: 10/bcwdjp
• Breaking the book: translating the chemistry lab book into a pervasive computing lab environment
  m.c. schraefel, Gareth V. Hughes, Hugo R. Mills, Graham Smith, Terry R. Payne, Jeremy Frey
  Proceedings of the SIGCHI Conference on Human Factors in Computing Systems, 2004
  DOI: 10.1145/985692.985696

2002

• k-Anonymity: A Model For Protecting Privacy
  Latanya Sweeney
  International Journal of Uncertainty, Fuzziness and Knowledge-Based Systems, 10(05), pp. 557--570, 2002
  DOI: 10.1142/S0218488502001648

1999

• Software Engineering Code of Ethics is Approved
  Don Gotterbarn, Keith Miller, Simon Rogerson
  Communications of the ACM, 42(10), pp. 102--107, 1999
  DOI: 10.1145/317665.317682
• Swift action needed to close the skills gap in bioinformatics
  Marlie MacLean, Colin Miles
  Nature, 401(6748), pp. 10--10, 1999
  DOI: 10.1038/43269

1995

• The role of help networks in facilitating use of CSCW tools
  J. D. Eveland, Anita Blanchard, William Brown, Jennifer Mattocks
  The Information Society, 11(2), pp. 113--129, 1995
  DOI: 10/dhfh8h

1994

• How accurate is scientific software?
  L. Hatton, A. Roberts
  IEEE Transactions on Software Engineering, 20(10), pp. 785--797, 1994
  DOI: 10/dr5wch

1992

• Statisticians at odds over software ownership
  Eliot Marshall
  Science, 255(5041), pp. 152--153, 1992
  DOI: 10.1126/science.255.5041.152

1984

• Personal computers attract lab software
  Arthur L. Robinson
  Science, 224(4644), pp. 40--44, 1984
  DOI: 10.1126/science.224.4644.40

1983

• Caltech torn by dispute over software
  Gina Kolata
  Science, 220(4600), pp. 932--934, 1983
  DOI: 10.1126/science.220.4600.932

1979

• Software engineering in 1968
  B. Randell
  Proceedings of the 4^th International Conference on Software Engineering (ICSE '79), pp. 1--10, 1979
• Software engineering – as it is
  Barry W. Boehm
  Proceedings of the 4^th International Conference on Software Engineering (ICSE '79), pp. 11--21, 1979

1969

• The publication of scientific Fortran programs
  K. V. Roberts
  Computer Physics Communications, 1(1), pp. 1--9, 1969
  DOI: 10.1016/0010-4655(69)90011-3

1961

• Pitfalls and safeguards in real-time digital systems with emphasis on programming
  W. A. Hosier
  IRE Transactions on Engineering Management, EM-8(2), pp. 99--115, 1961
  DOI: 10.1109/IRET-EM.1961.5007599